Sequence
atgc intronic sequence ATGC exonic sequenceCAAGGAAAGCTTACTTATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTGTTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGgtagtaccatctttcattcaaattcaatttggggtttggtaatgaaacatgaagtcagattgattcttttattttgtgttagttctctacttgcaacaat...
Basic information
species | Glycine max |
transcript | GLYMA19G34580.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM5G831712_T02 (Zea mays), 5'ss of exon 14
CAAGGAAAGCTTACTTATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTGTTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGgta-gtac-catctttcattcaaattcaatttggggtttggtaatgaaacatgaag--tcagattgattcttttattttgtgttag-ttctctacttgcaacaat
| ||||||||| || || ||| |||||||| || ||||| | ||||||||| ||||||| |||||||| ||||||||||||| || | | ||| ||| || | ||| | | |||| || |||| | | | | || |||| | ||||| || ||||| |||| | || | |
TAGAGAAAGCTTAATTGTTGCTGCGAGCAATCGCTTTTTCACTCTTATCCCTTCTATTCATCCTCATATTATACGGGATGAGGATGATTTGATGATCAAAgtatgtgctcattacctaattgtattc---ctgtaaattggaagaagcattcaatggctcctattgtattttttaattcatgttaacttcttcaaatggatta--
upper sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 14
lower sequence: AT2G31320.1 (Arabidopsis thaliana), 5'ss of exon 13
CAAGGAAAGCTTACTTATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTGTTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGgtagtaccatctttcattcaaattcaatttggggtttggtaatgaaacatgaagtcagattgattcttttattttgtgttagt-tctctacttgcaacaat
|| |||||||| ||| || |||| || || | || || ||||||||||||||| ||||||| |||||||| | ||||| |||||||||||||| |||||| ||| | | || | ||| | || | || || | || | | ||| | | || | | ||| || |||
GAAAGAAAGCTTGCTTGTTGATGCTAGTAACAGATTTTTTACCATGATCCCTTCTATTCATCCTCATATTATCCGAGATGAAGATGACTTTAAGTCAAAGgta-------cttgccatagaacatgaaccatggtgttgttttttaattcctagcctctttttctgtgttacaaagaggtattgtatctgtgtgtcacag-
upper sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 14
CAAGGAAAGCTTACTTATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTGTTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGgtagtaccatctttcattcaaattcaatttggggtttggtaatgaaacatgaagtcagattgattcttttattttgtgttagttctctacttgcaacaat---
||| |||||| | || || |||||||||||||||| ||||| |||| |||||| ||||||||||| | || |||||||| ||||| || ||||| |||||| | || | |||| |||| || || || | | |||| | || | | || | | | || | | | ||
CAAAGAAAGCCTGATTGTTGATGCCAGCAATCGGTTTTTCACTGTGATTCCTTCTATTCATCCACATGTAATCAGGGATGAAGATGATTTCAAGTCTAAGgtactgg-atgctacatttaaatacatcttccatgtttttg-cacattcccaagtttgtttctctttggtacatcacttgtgacaagtaatca-agctatgttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398054|gb|EV267932.1|EV267932EST: CACATATTATTAGGGATGAGGATGACTTTAAGTCCAAG GTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATTGCCTCAAGATTAGTT
genomic: CACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGgtagtaccat ... tttgatttagGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATTGCCTCAAGATTAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGGAAAGCTTACTTATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTGTTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGgtagtaccatctttcattcaaattcaatttggggtttggtaatgaaacatgaagtcagattgattcttttattttgtgttagttctctacttgcaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggggt