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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTTTTGGATGACACAGATTCAAGAgtggcatattattcttctgcttttcttctgaaggcatggattttaattgacttttggtgttaaaaatgtgttagatccatatatatgaccttttgtaataacttctcattgctgcag

Basic information

species Glycine max
transcript GLYMA18G52540.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52540.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G459642_T04 (Zea mays), 5'ss of exon 3
GGAACTTTTGGATGACACAGATTCAAGAgtggcatattattcttctgcttttcttctgaaggcatggattttaattgacttttggtgttaaaaatgtgttagatccatatatatgaccttttgtaataacttctcattgctgcag
||  ||| ||||||||||||||||||| || ||||| |||||| | ||||||||| |||||| |||   || ||   | |  || |     |    || ||| || |  |  ||      ||   | ||| | |  |  | |   
GGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTTTCTTTTGAAGgtatga--ttgaagcaattgctgattc---attgctgatagttctac-tccattttgccttaacacaacctgtgttaacag---

upper sequence: GLYMA18G52540.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G12590.1 (Arabidopsis thaliana), 5'ss of exon 15
GGAACTTTTGGATGACACAGATTCAAGAgtggcatattattcttctgcttttcttctgaaggcatg--gatttt---aattgac--ttttggtgttaaaaatgtgttagatccatatatatgaccttttgtaataactt----ctcattgctgcag----------------
||||||  ||||||| || |||||||| ||||| ||||| ||||| || ||||||||||||||| |  ||||||   |||| ||  ||||| | ||  |||    | |  |  |   |||  |  |||   ||||  ||    ||||  | |  |                 
GGAACTCCTGGATGATACTGATTCAAGGGTGGCTTATTACTCTTCAGCATTTCTTCTGAAGgcaagaggatttttcaaattcaccattttgattttggaaagacatcat-tgaaagaataataagtttccaaatattttttggctcaccggttaaaatttggattatttcag