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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAAACAGTATCCTGAAGCATATACATACAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaatgagaagtgagttgtaattgacattttcccaatcaagagcgtgccttaattcatttagagttctcttatcagg

Basic information

species Glycine max
transcript GLYMA18G52270.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 15
-TGTTAAACAGTATCCTGAAGCATATACATACAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaa---tgagaagtgagttgtaattgacattttccca--atcaagagcgtgccttaattcatttagagttctcttatcagg-----
   | ||||||||||| || ||||| || ||||| || ||||| || |||||  | |||||||| ||||||||||| |||| ||| |||||||||||||||| |   ||| |  ||  |  | | |  | || |   |  ||| | |    |  | ||  ||   | |      ||   |       
ACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGgtgaaattgacatttggttcctgacttgctttctgttatgatccacataaagaatcaacacaacaacaccatgtttcgaaattgcag

upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G13550.1 (Arabidopsis thaliana), 5'ss of exon 14
-TGTTAAACAGTATCCTGAAGCATATACATACAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaatgagaagtgagttgtaattgacattttcccaatcaagagcgtgccttaattcatttagagttctcttatcagg-----
   | || |||||||| || || || |||||||| || ||||| || |||||  | ||| |||| ||||| ||||| |||| |||||||||||||||||||| | || | | |  |  |  |     |  |   |||| |       | ||||  ||    |  || | ||   | |     
ACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGTGATAGTTCGAATCGATTCTCCTATTTACTTTGCCAACATAAGTTACATCAAGGACAGgtga-gaaaggcgtttattcttccttgtggtatgaatctattagaaacattaa--caagctggctttttttgcaaagtgcag

upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 14
-TGTTAAACAGTATCCTGAAGCATATACATACAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaatgagaagtgagttgtaa--ttgacattttcccaat-caagagcgtgccttaattcatt-tagagttctcttatcagg----------------------------------------------------------------
   || | || ||||| ||||||||||||||| |||| ||||| || |||||  ||||||| || |||||||||||||| | |||| |||| || || |||| |  ||| |||  |  | |  |||  |||||||     |  ||   |  |||| | || | ||   || |  ||  |                                                                  
ACATTCAGCAATATCCAGAAGCATATACATACCATGGGATTGTGATTGTTCGGATTGATGCACCCATTTATTTTGCAAATATAAGTCACATAAAAGAAAGgtgaaaagatgtgcttccttacattgctattttccaggcacctgatgttttcttattgcactgtatgatttttctaatatcggttatagttcataattccctaattaaaaaataacttttaaattattgagctgttctctgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395894|gb|EV265771.1|EV265771
EST:     GTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGG                         TTGCGTGAATATGAAGTTGATGTTGATCGTTCTAAAAGACGTGGACCTGAG
genomic: GTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaatgagaag ... tcttatcaggTTGCGTGAATATGAAGTTGATGTTGATCGTTCTAAAAGACGTGGACCTGAG
EST: gi|10233753|gb|BE802641.1|BE802641
EST:     GTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGG                         TTGCGTGAATATGAAGTTGATGTTGATCGTTCTAAACGACGTGGACCTGAG
genomic: GTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaatgagaag ... tcttatcaggTTGCGTGAATATGAAGTTGATGTTGATCGTTCTAAAAGACGTGGACCTGAG
EST: gi|192300273|gb|FG988780.1|FG988780
EST:     GTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGG                         TTGCGTGAATATGAAGTTGATGTTGATCGTTCTAAAAGACGTGGACCTGAG
genomic: GTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaatgagaag ... tcttatcaggTTGCGTGAATATGAAGTTGATGTTGATCGTTCTAAAAGACGTGGACCTGAG