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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgttatcag

Basic information

species Glycine max
transcript GLYMA18G51810.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgttatcag
|||||||||||| |||| || |||||||||||||||||||| |||||||| || ||||| || ||||| || ||    || ||  |||| |      |||    || |     || |||  | | |     | |    |||||| || |  ||  |   | ||  | ||||
GCAGAGAGTGCGATGGATCAGATGGATTGGATTGAAAAAATAACTGGTGTCATCGCTTCTTTGCTGAGCTCCCAATCGCCCGAACGGgtta-----gtgagtacttaggtggggt-tagttacatagccagatt----ttgatttatctgaca-ctaatattttgtttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaact--tccatgaac----ttttggtgatcgtgtagaaataaaatttaagtcaatttgattaa--tgttgcaatttgcaattgt-tatcag
|||||||||||  | || |||||||||||||||||||| || |||||||| ||||| || || || || || ||    || ||   ||| |||  || |||| |    ||||  || |  ||||      |  || || |    || |  ||  |||     | || | || | | ||||
GCAGAGAGTGCAATAGATCAAATGGATTGGATTGAAAAGATTACTGGTGTCATTGCATCTTTGCTTAGCTCACAATCCCCAGAACAGgtcactattcgatgacccagattttattgtttatgtatttgacatgttgaattttcgtttaccaaaatgtgatggtctgtacttctgtttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgt-tatcag
|||||||||||  | || || ||||| ||||||||||| || |||||||||||||| || |||||||| || ||    || ||   ||| | |   ||| |       || | |  | | |   |   |  | |  |||   || |   | |  || ||  || | | ||||
GCAGAGAGTGCAGTAGATCAGATGGACTGGATTGAAAAGATAACTGGTGTTATTGCCTCTTTACTGAGCTCACAATCGCCAGAACAGgttagta--atggatggcctctgtttggattgcatgtattctggaat--attcagtttacaatac--ttggctgttctgtttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaact--tccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgt-tgcaatttgcaattgttatcag
|||||||||||  |||| || |||||||||||||||||||| || || || |||||||| || ||||| || |||  ||||||  | |||| |  |  |||||| ||   | ||    || | ||  | ||| | | | | |||    ||| |    ||| ||           
GCAGAGAGTGCAATGGATCAGATGGATTGGATTGAAAAAATTACCGGCGTCATTGCTTCTTTGCTGAGCTCCCAGTCTCCTGAACGAgtaagtgattaatgaacattgaattatt---tacatatggactttgattta-tgtgacatctgtattttgtttacag----------

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G093670_T01 (Zea mays), 5'ss of exon 5
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgt-tatcag
|||||||||||  | || || ||||||||||||||||| || ||||||||||||||  | || ||||  || ||    || ||   ||| | |   ||| |   |   || | |  | | |       |  | |  |||   || |   | |  || ||  || | | ||||
GCAGAGAGTGCAGTAGATCAGATGGATTGGATTGAAAAGATAACTGGTGTTATTGCCCCTTTGCTGAACTCACAATCCCCAGAACAGgttagta--atggatggtctctgtttggattgcatgtcttctggaat--attcagtttacaatac--ttggctgttctgtttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaa-gtcaatttgattaatgttgcaatttg-caattgt-tatcag
|| |||||||| || || |||||||||||||| ||||| |||||||| |||||||| ||| |||| ||||||||| | |||||   ||||| |   || |   ||   | | |         | | ||| ||   ||||   | |   ||     |    |   |   | ||||
GCTGAGAGTGCACTCGATCAAATGGATTGGATAGAAAAGATCACTGGGGTTATTGCATCACTACTTAGTTCTCAGGTCCCTGAACAGgtaagtattatcattattcctttacctgaccaggctcatattaaataccaatgcaactttggtgattgtccatcggctacatttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttg-gtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgttatcag
||||||||||| |||||||||||||||||||||||||| || || || |||||||||||||||||||||||||||  |||||| ||||||| |       |  | ||  |||   | |||   |  | ||   |||| |||||| | |||  | |||      | || ||||
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtcattttgatgactgtatccatta-----tatt-tcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21637852|gb|BM108007.1|BM108007
EST:     AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCANATTCCTGATAGG                         ATGTTGCCTGCAAGCCCAATGGGAAGTGGTCA
genomic: AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttcca ... ttgttatcagATGTTGCCTGCAAGCCCAATGGGAAGTGGTCA
EST: gi|13251794|gb|BG362697.1|BG362697
EST:     AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGG                         ATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAG
genomic: AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttcca ... ttgttatcagATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAG