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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgttatcag

Basic information

species Glycine max
transcript GLYMA18G51810.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgttatcag
|||||||||||| |||| || |||||||||||||||||||| |||||||| || ||||| || ||||| || || || || |||| | ||| || | || ||| | | | | | |||||| || | || | | || | ||||
GCAGAGAGTGCGATGGATCAGATGGATTGGATTGAAAAAATAACTGGTGTCATCGCTTCTTTGCTGAGCTCCCAATCGCCCGAACGGgtta-----gtgagtacttaggtggggt-tagttacatagccagatt----ttgatttatctgaca-ctaatattttgtttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaact--tccatgaac----ttttggtgatcgtgtagaaataaaatttaagtcaatttgattaa--tgttgcaatttgcaattgt-tatcag
||||||||||| | || |||||||||||||||||||| || |||||||| ||||| || || || || || || || || ||| ||| || |||| | |||| || | |||| | || || | || | || ||| | || | || | | ||||
GCAGAGAGTGCAATAGATCAAATGGATTGGATTGAAAAGATTACTGGTGTCATTGCATCTTTGCTTAGCTCACAATCCCCAGAACAGgtcactattcgatgacccagattttattgtttatgtatttgacatgttgaattttcgtttaccaaaatgtgatggtctgtacttctgtttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgt-tatcag
||||||||||| | || || ||||| ||||||||||| || |||||||||||||| || |||||||| || || || || ||| | | ||| | || | | | | | | | | | ||| || | | | || || || | | ||||
GCAGAGAGTGCAGTAGATCAGATGGACTGGATTGAAAAGATAACTGGTGTTATTGCCTCTTTACTGAGCTCACAATCGCCAGAACAGgttagta--atggatggcctctgtttggattgcatgtattctggaat--attcagtttacaatac--ttggctgttctgtttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaact--tccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgt-tgcaatttgcaattgttatcag
||||||||||| |||| || |||||||||||||||||||| || || || |||||||| || ||||| || ||| |||||| | |||| | | |||||| || | || || | || | ||| | | | | ||| ||| | ||| ||
GCAGAGAGTGCAATGGATCAGATGGATTGGATTGAAAAAATTACCGGCGTCATTGCTTCTTTGCTGAGCTCCCAGTCTCCTGAACGAgtaagtgattaatgaacattgaattatt---tacatatggactttgattta-tgtgacatctgtattttgtttacag----------

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G093670_T01 (Zea mays), 5'ss of exon 5
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgt-tatcag
||||||||||| | || || ||||||||||||||||| || |||||||||||||| | || |||| || || || || ||| | | ||| | | || | | | | | | | | ||| || | | | || || || | | ||||
GCAGAGAGTGCAGTAGATCAGATGGATTGGATTGAAAAGATAACTGGTGTTATTGCCCCTTTGCTGAACTCACAATCCCCAGAACAGgttagta--atggatggtctctgtttggattgcatgtcttctggaat--attcagtttacaatac--ttggctgttctgtttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttggtgatcgtgtagaaataaaatttaa-gtcaatttgattaatgttgcaatttg-caattgt-tatcag
|| |||||||| || || |||||||||||||| ||||| |||||||| |||||||| ||| |||| ||||||||| | ||||| ||||| | || | || | | | | | ||| || |||| | | || | | | | ||||
GCTGAGAGTGCACTCGATCAAATGGATTGGATAGAAAAGATCACTGGGGTTATTGCATCACTACTTAGTTCTCAGGTCCCTGAACAGgtaagtattatcattattcctttacctgaccaggctcatattaaataccaatgcaactttggtgattgtccatcggctacatttcag

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttg-gtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgttatcag
||||||||||| |||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||| |||||| ||||||| | | | || ||| | ||| | | || |||| |||||| | ||| | ||| | || ||||
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtcattttgatgactgtatccatta-----tatt-tcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21637852|gb|BM108007.1|BM108007
EST:     AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCANATTCCTGATAGG                         ATGTTGCCTGCAAGCCCAATGGGAAGTGGTCA
genomic: AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttcca ... ttgttatcagATGTTGCCTGCAAGCCCAATGGGAAGTGGTCA
EST: gi|13251794|gb|BG362697.1|BG362697
EST:     AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGG                         ATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAG
genomic: AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttcca ... ttgttatcagATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAG