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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCTTAATCGTGGCCCTTCGAAAATCTCAATTACAGCCAACTGGGATGACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatttggattcattcaatcttttgttttgtaattgcttgcatgctttgtaactttgttttcatcacaattttgttggatacttgtgctataacttaaggtgtctgctaatgcatgtag

Basic information

species Glycine max
transcript GLYMA18G44820.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335838|gb|CO979704.1|CO979704
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|193659516|gb|FK601213.1|FK601213
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAG-CCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|193378399|gb|FK345090.1|FK345090
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|192330118|gb|FK019773.1|FK019773
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|193652033|gb|FK594209.1|FK594209
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|31309897|gb|CD395100.1|CD395100
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|208179640|gb|GD973615.1|GD973615
EST:     ACATTAATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|193535806|gb|FK492224.1|FK492224
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|193492420|gb|FK454830.1|FK454830
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGTATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
EST: gi|193495866|gb|FK458558.1|FK458558
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGA
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGA
EST: gi|151401278|gb|EV271092.1|EV271092
EST:     ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAG                         CACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT
genomic: ACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatt ... atgcatgtagCACAAGACATTGATGAGACCCTTCGTGGATAAATTGACTGCCACAGTAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGCTTAATCGTGGCCCTTCGAAAATCTCAATTACAGCCAACTGGGATGACATTGATATTCCACCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGgtattgtatttggattcattcaatcttttgttttgtaattgcttgcatgctttgtaactttgttttcatcacaattttgttggatacttgtgctataacttaaggtgtctgctaatgcatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA