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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCAggtattaactacttaaatttagcttctaagcataacaagatggagaagtggcaaaatgagcaatgtcatattcataggaataggagatgacaatggcatgtttatagagtaaattattctaaactaattgaacattctcttgttttgca

Basic information

species Glycine max
transcript GLYMA18G43310.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43310.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G162672_T01 (Zea mays), 5'ss of exon 14
GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCAggtattaactacttaaatttagcttctaagcataacaagatggagaagtggcaaaatgagcaatgtcatattcataggaataggagatgacaatggcatgtttatagagtaaattattctaaactaattgaacattctcttgttttgca
 ||| |||| |||||  ||||||||||||| |||||||| ||||||||||| |      ||| |  |     ||  |   |   |  |      |    ||     |||  |  | | |  | |||  |   || |     |    || ||   |||||                                      
-TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgt-----gcttcagctggttctcccactctcttactacttccgatc--cagctccagctcttccctttctaaaggtctt--aggtagtgtt----tggttccggagtatgg-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826413|gb|BE210143.1|BE210143
EST:     GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA                         GGCTAGTGCACAGCCATTTTTGGTGCTTGGTCTGTTGGTTACTGCTCTAGC
genomic: GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCAggtattaact ... ttgttttgcaGGCTAGTGCACAGCCATTTTTGGTGCTTGGTCTGTTGGTTACTGCTCTAGC
EST: gi|15203846|gb|BI426614.1|BI426614
EST:     GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA                         GGCTAGTGCACAGCCATTTTTGGTGCTTGGTCTGTTGGTTACTGCTCTAGC
genomic: GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCAggtattaact ... ttgttttgcaGGCTAGTGCACAGCCATTTTTGGTGCTTGGTCTGTTGGTTACTGCTCTAGC
EST: gi|16276277|gb|BI941773.1|BI941773
EST:     GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA                         GGCTAGTGCACAGCCATTTTTGGTGCTTGGTCTG
genomic: GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCAggtattaact ... ttgttttgcaGGCTAGTGCACAGCCATTTTTGGTGCTTGGTCTG