1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TCTCTTGGACGTGACAATGGTTTCTTGTGGGATGTGGTCAATCTGGAATCCAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGGtgaggaatttttatgtttttggtagttgatttgacttgttttgtttaaggaaataggtgatgcttggataaggggtatgtggactagaaattccagatgaaagtggttgtattgagaaatcacgttgtttatggaattgtgtagc
species | Glycine max |
transcript | GLYMA18G42790.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGC ATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTCEST: gi|31306745|gb|CD391948.1|CD391948
genomic: CAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGGtgaggaattt ... attgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
EST: AACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGC ATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTCEST: gi|21994254|gb|BQ785782.1|BQ785782
genomic: AACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGGtgaggaattt ... attgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
EST: AGAGAAAATGCTTCTGAGC ATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTCEST: gi|8284717|gb|BE022259.1|BE022259
genomic: AGAGAAAATGCTTCTGAGGtgaggaattt ... attgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
EST: CAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGC ATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
genomic: CAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGGtgaggaattt ... attgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTTGGACGTGACAATGGTTTCTTGTGGGATGTGGTCAATCTGGAATCCAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGGtgaggaatttttatgtttttggtagttgatttgacttgttttgtttaaggaaataggtgatgcttggataaggggtatgtggactagaaattccagatgaaagtggttgtattgagaaatcacgttgtttatggaattgtgtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA