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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCTTTTCGTCTCTTCGAATAGCTAATTACAAATCATTCACACGGTTTCACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAAggtaggaagccaacactcaattcaactatttgttttatgtaaagtgaagtattgaattggttcaggttagataactgatacactttagcggtaagtattgaatcattgtctaacattttgaatgtgca

Basic information

species Glycine max
transcript GLYMA17G36310.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057444|gb|CA800358.1|CA800358
EST:     CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAA                         GGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
genomic: CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAAggtaggaagc ... tgaatgtgcaGGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
EST: gi|192321094|gb|FK013554.1|FK013554
EST:     CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAA                         GGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
genomic: CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAAggtaggaagc ... tgaatgtgcaGGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
EST: gi|192321280|gb|FK012041.1|FK012041
EST:     CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAA                         GGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
genomic: CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAAggtaggaagc ... tgaatgtgcaGGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
EST: gi|22933232|gb|BU550371.1|BU550371
EST:     CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAA                         GGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
genomic: CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAAggtaggaagc ... tgaatgtgcaGGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
EST: gi|207779371|gb|GD751629.1|GD751629
EST:     CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAA                         GGTTCCAAAGGAATGGAAGCTCGATCCTGATTGGGA
genomic: CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAAggtaggaagc ... tgaatgtgcaGGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGA
EST: gi|51341645|gb|CO982962.1|CO982962
EST:     CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAA                         GGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA
genomic: CACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAAggtaggaagc ... tgaatgtgcaGGTTCCAAAGGAGTGGAAGCTTGATCCTGATTGGGATGGAGAGACAAAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCCTTTTCGTCTCTTCGAATAGCTAATTACAAATCATTCACACGGTTTCACATCAATTCGGATGGTGATCTTGAAGTTTATACTTTGGCTGTTGATAAggtaggaagccaacactcaattcaactatttgttttatgtaaagtgaagtattgaattggttcaggttagataactgatacactttagcggtaagtattgaatcattgtctaacattttgaatgtgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT