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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTACAATATTGTCGAACTCAATGCCACCCTCGTCTATCTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaatatgttttcaattaatgtagagaaatttgttttggcctttagatttgatctggttattgaagatgttggagaccattgggtctttttttt...

Basic information

species Glycine max
transcript GLYMA17G11220.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11220.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 5'ss of exon 14
GTATTTACAATATTGTCGAACTCAATGCCACCCTCGTCTATCTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaatatgttttca-attaatgtagagaaatttgttttggcctttagatttgatctggttattgaagatgttggagaccattgggtctttttttt
|||| |||| |||||||||||  |||| || ||||| || || || || ||| | ||| | ||||||||| ||||||| ||||||||||||||||| |   | |    ||| ||     ||||  ||| |  | |      || || ||  |||||| ||| ||                            
GTATATACAGTATTGTCGAACCGAATGTCATCCTCGCCTGTCAGATTCTGCATCCACAATGTTGCAGAATAATTATGTCAAAATCAGACAGgtatccttgttgtcggctcatatccccatagaagaatattctct------taaatatg--ctggtttttgtag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193638743|gb|FK586901.1|FK586901
EST:     CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAG                         GATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
genomic: CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaa ... aaatatacagGATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
EST: gi|193619187|gb|FK569865.1|FK569865
EST:     CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAG                         GATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
genomic: CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaa ... aaatatacagGATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
EST: gi|15814447|gb|BI786722.1|BI786722
EST:     CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAG                         GATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
genomic: CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaa ... aaatatacagGATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
EST: gi|193608188|gb|FK555757.1|FK555757
EST:     CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAG                         GATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
genomic: CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaa ... aaatatacagGATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
EST: gi|22932051|gb|BU549190.1|BU549190
EST:     ATTATTGCAGAATCATTATGTGAAAATCAGACAG                         GATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
genomic: ATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaa ... aaatatacagGATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
EST: gi|193650510|gb|FK600281.1|FK600281
EST:     CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAG                         GATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT
genomic: CTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgtatcatgaa ... aaatatacagGATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATT