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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgatcattgtatattgtgtttacatgggctgtccttgatctttcccttttaaatttgatattcataaatcataactgaaactggacacgttctttgtacttacaatttctgttgtacctggtag

Basic information

species Glycine max
transcript GLYMA17G07380.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 15
GGGAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcg-atcattgtatattgtgtttacatg--ggctgtccttgatctttcccttttaaatttgatattcataaatcataactgaaactggacacgttctttgtacttacaatttctgttgtacctggtag
||||||| || |||||||| || ||||||||||| ||||| ||||| |||||||   ||  || ||| | | |   | ||   |   | ||  |||  || |||     ||    |||||| |||    | |    | |||||  ||   ||  |     |||| || | |||   |    |   
GGGAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtcctataattttgtttcaagcttttctaatgtcttgcctgcatgtttgtagctttttcttgataatcac---ttaaggataaaact--acttctttatgaactttactatgtgtgtaccatgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410382|gb|EV280197.1|EV280197
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|151407803|gb|EV277618.1|EV277618
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|51335738|gb|CO979604.1|CO979604
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|10235983|gb|BE804871.1|BE804871
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|19934808|gb|BQ079838.1|BQ079838
EST:     CAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: CAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|5760217|gb|AI965580.1|AI965580
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|207762590|gb|GD733437.1|GD733437
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTTGTCATCATGA
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTT-GTCATCATGA
EST: gi|192327522|gb|FK018198.1|FK018198
EST:     GGATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|298193926|gb|HO040574.1|HO040574
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|193493506|gb|FK460088.1|FK460088
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|16276935|gb|BI942118.1|BI942118
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
EST: gi|13478586|gb|BG508003.1|BG508003
EST:     GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAG                         TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT
genomic: GAATTCAAACTCAACATAGAGTGCAACCATGCCACCCTCTCTGGCCACAGgtgaatcgat ... tacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATAT