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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAGGACCTCCAACTTTAGACTCCCTTCTGATAATAAAGTGCCTATAATCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatctacttgatattctatcttctaattctttcttccatccatctactatgccaattatttattttgttttttatttgcactttag

Basic information

species Glycine max
transcript GLYMA17G07050.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 14
TGTTAGGACCTCCAACTTTAGACTCCCTTCTGATAATAAAGTGCCTATAATCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatctacttgatattctatcttctaattctttcttccatccat-ctactatgccaattatttattttgttttttatttgcactttag--
|||||||   |||||||| | ||| ||| |||||| |  |||||| || ||||||||||| |||||||| ||||| |||||||| || |||||| ||||||||| ||||  ||    |   | || |    | |    | | | | | |  || |    |||     |    || ||| | ||| || || |   
TGTTAGGCAATCCAACTTCAAACTTCCTGCTGATACTTCAGTGCCGATTATCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttt-taattgacagacttgaccatttagcgacttcggccttcttacttattattgcttcaaccgactgacctgatttatgttttcatttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203101|gb|BI425869.1|BI425869
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|254332042|gb|GR846245.1|GR846245
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|120534217|gb|EH262350.1|EH262350
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|105633983|gb|DW247346.1|DW247346
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|254341892|gb|GR853029.1|GR853029
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGA-GGAGGAGCTGA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGA
EST: gi|4286168|gb|AI441008.1|AI441008
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAN                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|10710524|gb|BF010242.1|BF010242
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|105634392|gb|DW247541.1|DW247541
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCCTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA