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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtgtacttttgatttgttaagaaccatttaattatgtatagatgcaataagttgaattgcttttcaaactttacag

Basic information

species Glycine max
transcript GLYMA17G07040.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07040.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 14
GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtgtacttttgatttgttaagaaccat-----------ttaattatgtatagatgcaataagttgaattgcttttcaaacttt-acag
|| || |||||||||||||||||||| || ||||| ||||||||||| |   | |   ||    ||  ||| |  ||            |||||  || ||      |  |   ||||| ||  ||     | | ||||
GCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAGgtatttcctatttcttccccttaataaaatacacattttaaatagttaatattgaattaccataggagactgaatcgccattttgtttctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193387538|gb|FK350015.1|FK350015
EST:     CAGGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: CAGGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|31457335|gb|CD399363.1|CD399363
EST:     GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCTAGCACCGGCTGAG
genomic: GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|209709785|gb|BW674001.1|BW674001
EST:     GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG