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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccaattcctgttaatatacttgaattttgtaccaaaattctgctgccagcacatgacaacttattgtaattgtaagcatctt...

Basic information

species Glycine max
transcript GLYMA17G05390.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 14
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccaattcctgttaatatacttgaattttgtaccaaaattctgctgccagcacatg-acaacttattgtaattg----taagcatctt
| || || || |||||  | ||  | || |||||||||||||| |||||||| ||||| || |||||||| |||||||| || |||||||||||  | |||| |  | |     | || |||||   |    | ||     |||||  ||||||     | |    |||  ||  |     |  ||||| |    | |  || | 
AATTCGTGGAACAAGGAAGGGTCTTGCACAATTATGCTTCAATTTTGGAGTTGCTTTTGCGCCTTCGGCAGTGTTGTGACCACCCATTTCTTGTTCTTAGgt-tagttttcagaagtcacaatta--gcctgtttaaccagatttttcaccaaa-caaagataaatgcatttgtgctctccagagtaataggttctgaaaattt-

upper sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G057504_T01 (Zea mays), 5'ss of exon 3
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccaatt----------cctgttaatatacttgaattttgtaccaaaattctgctgccagcacatgacaacttattgtaattgtaagcatctt-----------------------------------------------------------
| ||||||||||||||  | ||||| || || ||||||||||| |||||||||||||| || ||  ||||||| |||||||||||||| ||| | ||||||| || || | | || | | |             |||||||   |||||||| |||| |     ||  | |         ||  |||  | || |||   | | ||||                                                             
AATTTGTTGAGCAAGGAAGGGTTCTGCACAACTATGCTTCAATTTTGGAGTTACTTTTGCGCCTAAGGCAATGCTGTGATCATCCATTCCTTATTATGAGgtttgttgccatgcaatgctatccataacagtagcctgttatggtacttgaaatttggatttgtatcttac-----atgaatagcaatatcttttaaaactgaacatcgatatttatggtcttttgttgtcaattacctattgatgatggagttttttttggttgccag

upper sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 14
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtct--tacattcccaattcctgttaatatacttgaattttgtaccaaaattctgctgccagcacatg-acaacttattgtaattgtaagcatctt
| |||||||| |||||    ||||||||||| |||||||| ||  ||||  | ||||| |||||||| |||||||||||||| |||||| | |||||||||| ||   | |  |   ||   | ||  | |  ||| ||   | |  ||     || |||    || |    ||      | |   ||  |   ||  |||  
AATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCATTTTTAGTAATGAGgtgtggcttttactggctttttatttagtatagatacac---attgctgggtttaacttccatggctacttaatctgttgcatgacgttgtataaaatatcca

upper sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccaattcctgttaatatacttgaattttgtaccaaaattctgctgccagcacatgacaacttattgtaattgtaagcatctt-----
| |||||||||||||| || |||||||||||||||||||| || |||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||| || | |||||| |         |  ||| |    | || |  ||  | |      || |||  |   ||||   ||  |  ||||   ||  ||  |     
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttg-tctcttacttgggtttgctccattagtga--tggattcatgccctagtgcagtggtgctggtg-atgatg-ctgttgataataacaatgatggtggtgc