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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTAATAGAAAACACACGAGCAAATGAAATTTTGAAACAGGCCCCTTTCTTGATACCATTTACAAGCAGGGTTAAAATATTCTCTgtaagaatcttttttgactttgattttgtttctggttacctttgtattatctatttacaatagatagctgcaactgctagcaaggttctggagtttctgcatatcataacatgtcactggtccattaatatattagtttacactttacagtgactataatctgtttattgtttcatcag

Basic information

species Glycine max
transcript GLYMA17G04180.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04180.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 15
GCTGTAATAGAAAACACACGAGCAAATGAAATTTTGAAACAGGCCCCTTTCTTGATACCATTTACAAGCAGGGTTAAAATATTCTCTgtaag-----aatcttttttgactttgattttg--tttctggttacctttgtattatctatttacaatag-atag-ctgcaactg-ctagcaaggttct----ggagtttctgcatatcataacatgtcactggtccattaatat--attagtttacactttacagtgactataatctgtttattgtttcatcag
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GCTGTGATAGAAAACACCAGAGCATATACTATATTGAAACAAGCTCCATTCTTGGTGCCATTTACAAGCAGAGTTAAAATATTTACTgtaagtgattaattgatcacaagtttgtgtttaaatttttaggcttgcatgcatgcagtgtttagaacagtataggctctgattaattagatctgttttcattaaaaaatatattttccatgagaaataacaattaaatccatttgaattctgtttcacttactactagttatg--ctgatacctatctt-ccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126547|gb|BG790985.1|BG790985
EST:     AACAGGCCCCTTTCTTGATACCATTTACAAGCAGGGTTAAAATATTCTCT                         TCTCAACTAGCTGCTGTTAGGCAAAGGCATGGACCTCAAGCTGTATTTTCT
genomic: AACAGGCCCCTTTCTTGATACCATTTACAAGCAGGGTTAAAATATTCTCTgtaagaatct ... gtttcatcagTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGACCTCAAGCTGTATTTTCT