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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGGTATTCCAGACGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTACCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaaagcacaagttggattgaatttttttatgttgattgattctgattttaacattcttggcag

Basic information

species Glycine max
transcript GLYMA17G04070.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04070.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 5'ss of exon 14
GTCAGGTATTCCAGACGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTACCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaaagcacaagttggattgaa---ttt-----ttttatgttgattgattctgattttaacattcttggcag
 |||    | ||  | |||||||| |||| | |  |  |  | |||||| | ||||||||| |||| |||||||| || ||| | ||||||||||||||||||  |     |  ||    |||||   |||     ||  | |     || || || | | |    |     |||
ATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAATTACCCAATGCTGAATTTCATGCTCACAACTGCTATATATGTTGCAgtaagtagatcttccctgtgactttgaagagtttagaccttacaggcaacctgcttatgttataacttattcctacag

upper sequence: GLYMA17G04070.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 14
GTCAGGTATTCCAGACGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTACCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaaagcacaagttggattgaatttttttatgttgattgat-------tctgattttaacattcttggcag---------------
 || ||  | ||||| |  || || ||| |||||||||| ||||| |||   || ||| | ||||| |||||||| ||||||||||||||| ||||||||||| | |      | ||   ||||| ||||  |     |   |        |||   || | ||  |    ||                
ATCGGGATTGCCAGATGCACAGCCAAAACTGTTGCTTTCTCTGATTCCAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAgtaagtaacagattttattttctttgaaattttgaaaaaaaaaaaaaaaagaaatctaggttgaccaaacccaccaatctcctactgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287200|gb|BI471091.1|BI471091
EST:     CAGACTACCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCA                         ATTTCCTATAGGCTCTTTGACCTGACAAATACACTGAAAATGGCATTTGTA
genomic: CAGACTACCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaa ... ttcttggcagATTTCCTATAGGCTCTTTGACCTGACAAATACACTGAAAATGGCATTTGTA