1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAGTTGCACTCAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgtttggcttcagctaatctaaccttttcatatgtcaaatcccatatatgatgaatgtttctacttatctgggtccggtccggtgattacgttataatgttttgaccaaacttccttggacttgtcatatgtgttgtacag
species | Glycine max |
transcript | GLYMA17G02680.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAG TATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCAEST: gi|193525136|gb|FK479185.1|FK479185
genomic: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgttt ... tgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
EST: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAG TATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATACGAGCEST: gi|193456209|gb|FK423921.1|FK423921
genomic: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgttt ... tgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAAT-CGAGC
EST: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAG TATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCAEST: gi|207826760|gb|GD800249.1|GD800249
genomic: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgttt ... tgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
EST: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAG TATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
genomic: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgttt ... tgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTGCACTCAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgtttggcttcagctaatctaaccttttcatatgtcaaatcccatatatgatgaatgtttctacttatctgggtccggtccggtgattacgttataatgttttgaccaaacttccttggacttgtcatatgtgttgtacag
- - - - - - - AAGAGG
- - - - - - - AGAGGA
- - - - - - - - GAGGAG
- - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AGAGCA