Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTACGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaatacataattgatgaacttactttactccctaaaacacagaaaggaaatgttttatctgattcttatcaaatgtatattttgcttattttt...

Basic information

species Glycine max
transcript GLYMA16G31860.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193331019|gb|FK294579.1|FK294579
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAA
EST: gi|193411451|gb|FK378544.1|FK378544
EST:     AGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: AGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|207736233|gb|GD711314.1|GD711314
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGA
EST: gi|193517341|gb|FK476536.1|FK476536
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|208051494|gb|GD845947.1|GD845947
EST:     TGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: TGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|208045225|gb|GD839745.1|GD839745
EST:     TGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: TGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|208230672|gb|GE029865.1|GE029865
EST:     GAAACTTCAATAGTACCTTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGA
genomic: GAAACTTCAATAGTACC-TGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGA-TTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGA
EST: gi|208322026|gb|GE121311.1|GE121311
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGACTCAACGGA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG-CTCAACGGA
EST: gi|208258298|gb|GE054955.1|GE054955
EST:     GAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|193672847|gb|FK619843.1|FK619843
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGG
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGG
EST: gi|207717653|gb|GD697755.1|GD697755
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|207825899|gb|GD801054.1|GD801054
EST:     GAAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGTGGAAAGAAAAGCTCAACGGAA
genomic: G-AATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|208193328|gb|GD990295.1|GD990295
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
EST: gi|208276575|gb|GE076997.1|GE076997
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|208226795|gb|GE021936.1|GE021936
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
EST: gi|193727273|gb|FK666269.1|FK666269
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|207710468|gb|GD690704.1|GD690704
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|208254446|gb|GE052154.1|GE052154
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|193633885|gb|FK582029.1|FK582029
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|193316129|gb|FK282223.1|FK282223
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAG
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAG
EST: gi|207809889|gb|GD782789.1|GD782789
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGTGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|208197780|gb|GE001158.1|GE001158
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
EST: gi|193565849|gb|FK523218.1|FK523218
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAAGAAAAAGCTCAACGG
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAA-GAAAA-GCTCAACGG
EST: gi|207773278|gb|GD743184.1|GD743184
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: gi|207794518|gb|GD767167.1|GD767167
EST:     GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG                         TGCTTGTCGTGAGAAGATTTTGGAG
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTACGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaatacataattgatgaacttactttactccctaaaacacagaaaggaaatgttttatctgattcttatcaaatgtatattttgcttattttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggaaa