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CCAAAGTTCTGAAGATGCTTCAAACAATAAAGATAAGGAAGAAAAAGAAATTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaatttaaaatttcactcaaatggctatggagtacttgatttgggcatttgtacaatactgcatgaagtatttaaaagtggatatttgttaaa...
species | Glycine max |
transcript | GLYMA16G29040.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|209703807|gb|BW670716.1|BW670716
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: GACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|58015489|gb|CX702231.1|CX702231
genomic: GACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTACCTTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|51343790|gb|CO984523.1|CO984523
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGTTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|12773901|gb|BG238828.1|BG238828
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|209704186|gb|BW664804.1|BW664804
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|209711102|gb|BW665280.1|BW665280
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|11411912|gb|BF423923.1|BF423923
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|14196108|gb|BE657976.2|BE657976
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTAAACATGGAAGACATGAGACAGNNNAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|51343794|gb|CO984527.1|CO984527
genomic: TTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCACEST: gi|209728423|gb|BW654923.1|BW654923
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAG GTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGTTCTGAAGATGCTTCAAACAATAAAGATAAGGAAGAAAAAGAAATTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGACTCAGgtagggtgaatttaaaatttcactcaaatggctatggagtacttgatttgggcatttgtacaatactgcatgaagtatttaaaagtggatatttgttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA