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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCAAACCAATGGGGATCTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtagtgacttggaattttcacccacttcacctttattgcaaatcaatgacttgcagaattcatgataacttggatcagagaacaatatttttta...

Basic information

species Glycine max
transcript GLYMA16G27210.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27210.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv05s0051g00870.t01 (Vitis vinifera), 5'ss of exon 15
CTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCAAACCAATGGGGATCTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtagtgacttggaattttcacccacttcacc-tttattgcaaatcaatgacttgcagaattcatgataacttggatcagagaacaatatttt-tta-
|||| || ||| | || || || ||||| | ||| ||| |  | || ||  | |||||||| ||||||||||||||||| |||||||| || |||||||||||  || |   |  || ||||||      ||  |   |||||       ||| ||    |||| |     ||  ||||  |   ||   | |||  | ||| 
CTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCAAGCAGAGGGAGACATTTTGGTTTTCACATCAACCTTCAATCCAATGAAAAACACAATCTCTGGgtatatgcaacaatatgaaattttattgtgctagataatttataatcttacaaagaa--acagattatcctatt-cttgtgtagaagtttattatagtgttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193699769|gb|FK641652.1|FK641652
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGAAGAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: gi|9820553|gb|BE556063.1|BE556063
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: gi|207691197|gb|GD673205.1|GD673205
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAA-TACCATCTCTGG                         GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATG
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATG
EST: gi|21256789|gb|BQ453677.1|BQ453677
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGNNNNNNNCTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAA-CTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATA
EST: gi|11412011|gb|BF424022.1|BF424022
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: gi|15202278|gb|BI425317.1|BI425317
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: gi|193319362|gb|FK285526.1|FK285526
EST:     TGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATAACCATCTCTGG                         GCGACAAGAAAA
genomic: TGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATA-CCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAA
EST: gi|254323261|gb|GR840066.1|GR840066
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: gi|17153856|gb|BM143789.1|BM143789
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: gi|193388180|gb|FK354325.1|FK354325
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGAAAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAA
EST: gi|57575684|gb|CX548659.1|CX548659
EST:     CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG                         GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCAAACCAATGGGGATCTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtagtgacttggaattttcacccacttcacctttattgcaaatcaatgacttgcagaattcatgataacttggatcagagaacaatatttttta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccac