1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtttcttcatcctctttgccaatgtataactatttttccaagttgcaatcttattttcaatgatatcattcataaattatgaatattaatgtttaataaataggtgtttgtttttgcattgcag
species | Glycine max |
transcript | GLYMA16G24310.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CGAAAGGATAAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT GTCGAAGTAACAGATCACATTGAAGGCCATTCGTCTTATCTGTGGGCCACAEST: gi|193404458|gb|FK365367.1|FK365367
genomic: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtt ... tgcattgcagGTCGAAGTAACAGATCACATTGAAGGCCATTCGTCTTATCTGTGGGCCACA
EST: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT GTCGAAGTAACAGATCACATTGAAGGCCATTCGTCTTATCTGTGGGCCACAEST: gi|58016941|gb|CX703683.1|CX703683
genomic: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtt ... tgcattgcagGTCGAAGTAACAGATCACATTGAAGGCCATTCGTCTTATCTGTGGGCCACA
EST: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT GTCGAAGTAACAGATCACATTGAAGGCCATTCGTCTTATCTGTGGGCCACAEST: gi|58016695|gb|CX703437.1|CX703437
genomic: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtt ... tgcattgcagGTCGAAGTAACAGATCACATTGAAGGCCATTCGTCTTATCTGTGGGCCACA
EST: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT GTCGAAGTAACAGATCACATTGAAGGCCATTCGTCTTATCTGTGGGCCACA
genomic: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtt ... tgcattgcagGTCGAAGTAACAGATCACATTGAAGGCCATTCGTCTTATCTGTGGGCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACTCACGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtttcttcatcctctttgccaatgtataactatttttccaagttgcaatcttattttcaatgatatcattcataaattatgaatattaatgtttaataaataggtgtttgtttttgcattgcag
- - - - - - - - - GCTGGA