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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAGgtaattgactttgtcttattgtccacattggcgcatctttcaaactaaatttggcttggtttaatgcaaaatttaagctgtaattacttaaaatggtagtttggtttcttgcag

Basic information

species Glycine max
transcript GLYMA16G18110.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G35980.1 (Arabidopsis thaliana), 5'ss of exon 12
AAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAGgtaattgactttgtcttattgtccacattggcgcatctttcaaactaaatttggcttggtttaatgcaaaatttaagctgtaattacttaaaatggtagtttggtttcttgcag
||| |||||| ||  | |||||||| |||||||||||||| ||| | ||||||||||| |||||||| |||||||| ||||||||| |  |||     |  |||   |  ||     |||| |  |  | | ||||     |  |  ||     |   |||  ||||   |||| ||     |||  | | ||    
AAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAGgtattgaact-----tccttgcttaagtt-----atctatatatttgattttga---aggcttctgttttttgctagccataatggattaacatcaacttttcatgttttaag-

upper sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 11
AAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAGgtaattgactttgtcttattgtccacattggcgcatctttcaaactaaatttggct-tggtttaatgcaaaatttaagctgtaattacttaaaatggtagtttggtttcttgcag
|||||| | | ||  |||| || || |||||  |||  || || |||||||||||||||||||| || |||||||| |||||||| |||| |||| ||  | | ||  ||||     |||||  ||  | | ||  |||    |  |||  | | || | |||||   || ||| | |  |    |  | |  |||||
AAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgttattgtctttatcacagtatcagcattttatgatcttggaacttgatttctgctgctatgcaatatatatttcaggctgtggatagttagagtt-tgaactcctattctgcag