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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGATACTTTATATTGTTACGTCAGTATACTTTTCTGGAGTCATGgtaagaataataatggagttttttcttactattgcatttttattattttattgaggacataatcttgctgaatatcag

Basic information

species Glycine max
transcript GLYMA16G08410.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 14
GCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGATACTTTATATTGTTACGTCAGTATACTTTTCTGGAGTCATGgtaaga---ataataatggagttttttcttactattgcatt--tttattattttattgaggacataatcttgctgaatatcag---------
|| |||||||| || ||||||||||| ||||| |||||| | ||||| ||||| | ||| ||||||||||||||||| ||||||||     |    ||| | |    |   |   ||   ||   |  ||||||||||||       ||    |||  |  | |         
GCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATGgtaagttgtgtgtctatgaattgccgttgcatctttctgttgcctagttattttattgaaccatgtattcacctgtcttcctgttctcttag

upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 14
GCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGATACTTTATATTGTTACGTCAGTATACTTTTCTGGAGTCATGgtaagaa--------taataatgga-gttttttcttactattgcatttttattattttattgaggacataatcttgctgaa-tatcag-----
||||||||||  || |||||||||||||||||||||||  | ||||| || || || || ||||| ||||||||||||||||| || |         || ||   |  ||||| ||     ||    |||||| ||| | |    | || |||  |  |||| ||| |      
GCATGCTTTTTGCCACTATCTGATGCAAGCTCCTTTGTTGTTCTTTACATAGTGACATCTGTATATTTTTCTGGAGTCATGgtgaggagattgttacaagaacaaacatttttcctcgtctttctgcttttatcattcttt----gtcacaattgttttgaactattattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21637818|gb|BM107973.1|BM107973
EST:     CCTTTGTGATACTTTATATTGTTACGTCAGTATACTTTTCTGGAGTCATG                         GTTCGCTTGATGCTCGTACTTGCTCCAGCTGCATGTATTTTGTCTGGGATT
genomic: CCTTTGTGATACTTTATATTGTTACGTCAGTATACTTTTCTGGAGTCATGgtaagaataa ... tgaatatcagGTTCGCTTGATGCTCGTACTTGCTCCAGCTGCATGTATTTTGTCTGGGATT