Sequence
atgc intronic sequence ATGC exonic sequenceGGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGATGATGTTGCTGAGCATGGTCGTGAAGCTGCTCTTAAgtaagatctctctccttttgggggtccccttttcttttgttcttattgttgattgtctgcaattccacacttaaaattattttattccctttacttggaatgattttgttctatattttaaatgcttctttatgttgttgctacag
Basic information
species | Glycine max |
transcript | GLYMA16G04400.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G04400.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os07g38760.1 (Oryza sativa), 5'ss of exon 14
GGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGATGATGTTGCTGAGCATGGTCGTGAAGCTGCTCTTAAgtaagatctctctccttttgggggtccccttttcttttgttcttattgttgattgtctgcaattccacacttaaaattattttattccctttacttggaatgattttgttctatattttaaatgcttctttatgttgttgctacag
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GGAAAAGATAAGACTGCTGAAGAGAGAAGGATAGCTATCTGTATATTTGATGATATTGCAGAGCAATGTCGTGAATCTGCTCTCAAgtatgttcctcaaagctatttggttggatgcagggcttgtatttgtaactgaat-tatgtattttcctatctga--ttag------------------------------------------------------------------
upper sequence: GLYMA16G04400.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 13
GGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGATGATGTTGCTGAGCATGGTCGTGAAGCTGCTCTTAAgtaagatctctctccttttgggggtccccttttcttttgttcttattgttgattgtctgcaattccacacttaaaattattttattccctttacttggaatgattttgttctatattttaaatgcttctttatgttgttgctacag
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GGTAAGAATAAATCACCAGAAGAAAGAAGGATTGCCATATGCATTTTTGATGATGTTGCTGAGCATTGCCGTGAAGCAGCAGTTAGgtaacagttgta-cgatccatacatgacactttgcttggtgaaggtgaaagattgt-tgtgagc-------tgtgatcattttacatgtttt-tttgtgat-atctgattgtcag-------------------------------
upper sequence: GLYMA16G04400.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 14
GGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGATGATGTTGCTGAGCATGGTCGTGAAGCTGCTCTTAAgtaagatctctctccttttgggggtccccttttcttttgttcttattgttgattgtctgcaattccacacttaaaattattttattccctttacttggaatgattttgttctatattttaaatgcttctttatgttgttgctacag
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GGTAAAGATAAAACGGCCGAAGAGAGAAGAATTGCCATTTGTATATTTGATGATGTTGCTGAGCAATGTCGAGAATCAGCTCTTAAgtaag--catttcagttttaaaaaatatcttgtttgaagtgctggtgattgctgattttttcttctatttccttaaccaatatgttggtggaacag--------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12690810|gb|BG157146.1|BG157146EST: ATTTGTATATTTGATGATGTTGCTGAGCATGGTCGTGAACCTGCTCTTAC ATATTATGATTCTTTTCTTCCATTCTTACTAGAAGCTTGCAATGATGAATA
genomic: ATTTGTATATTTGATGATGTTGCTGAGCATGGTCGTGAAGCTGCTCTTAAgtaagatctc ... gttgctacagATATTATGATTCTTTTCTTCCATTCTTACTAGAAGCTTGCAATGATGAATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGATGATGTTGCTGAGCATGGTCGTGAAGCTGCTCTTAAgtaagatctctctccttttgggggtccccttttcttttgttcttattgttgattgtctgcaattccacacttaaaattattttattccctttacttggaatgattttgttctatattttaaatgcttctttatgttgttgctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT