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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATGTTgtcagtgctctaaactaattcactttattcagctgtgaacatctttaataggaagccatcttttctgtccttactgtcctctttgttgttgaattttttg...

Basic information

species Glycine max
transcript GLYMA16G02770.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 5'ss of exon 14
AGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATGTTgtcagtgctctaaactaattcactttattcagctgtgaacatctttaataggaagccatcttttctgtccttactgtcctctttgttgttgaattttttg
 || |||||||| |||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||  | ||||| || |||| |||| | ||| ||||||| |||    |    |  || || |  |    ||  |||  | || || | |||       |||   || |   | || | ||| | ||   | |     
TGCAGATTTTGGTTCATTGGAGCTCTCCCCAGTCGATGGCCGGACTCTAACTGATTTTATGCACACAAGAGGTCTTCGGATGCGTTCTTTAGGATATGTTgtaagt----tggctttcttaacctcgtgtttcttagaaactattcaagatgaa-------ttttgatcatccatatcttttttatggtgacaatag---

upper sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g01140.t01 (Vitis vinifera), 5'ss of exon 5
AGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATGTTgtcagtgctctaaactaattcactttattcagctgtgaacatctttaataggaagccatcttttctgtccttactgtcctctttgttgt-tgaattttttg--
 || |||||||| |||||||||||||||||||| ||||| |  || || |  ||||| ||||||||| | ||||| ||||||| |||||| ||||||||||| |||| | ||  |   |    |||  |   || |  |  |||| | ||        |||      |    |   ||||   | || | | ||||| |||  
TGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATGTTgtaagtgttgtactcccctaggttttgattc-ctttacatgtctt-agtaaagtatt-tctgcatcataaagaaactcctaagttttatctcaatttattgat

upper sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 14
AGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATGTTgtcagtgctctaaactaattcactttattcagctgtgaacatctttaataggaagccatcttttctgtccttactgtcctctttgttgt-tgaattttttg--
 || |||||||| |||||||||||||||||||| ||||| || || || || ||||| ||||||||| | ||||| ||||||| |||||| ||||||||||| |||||| ||  |   |    |||  |   || |  |  |||| | ||        |||      |    |   ||||  || || | | ||||| |||  
TGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCGGACGCTGACCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATGTTgtaagtgctgtactcccctaggttttgattc-ctttacatgtctt-agtaaagtatt-tctgcatcataaagaaactcctaatttttatctcaatttattgat

upper sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S363_15V6.1 (Physcomitrella patens), 5'ss of exon 13
AGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATGTTgtcagtgctctaa---actaattcactttattcagctgtgaaca---tctttaataggaagccatcttttctgtccttactgtcctctttgttgttga-attttttg-----------------------------------------------------------------------
 || || ||||| ||  | || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||||  |||| |||  | ||    || || ||   |  ||   || |  |  | |   |    |            ||||     | | | |  | | || |   |  || |   |   |||  | | |  ||                                                                        
GGCAGACTTTGGATCCCTTGAGCTCTCACCAGTGGATGGACGTACTCTTACAGATTTCATGCACACTCGGGGTCTACAGATGCGTTCCTTGGGGAGAGTGgtaagcatttcaacacacaagattgcgtggctacattacatttgggtcgtttatctctaggtcgttgtatttgactcaa--gttcgtctcactgtaaagactaattagagccatcaaacaacctatctcggtcaatggaacataattgattgaatggaagttatgctcgacgttgcag