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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtctacattttttaatgtagtattgccatcaaatttgtgaatcactttaattgtaacatttgttaatttcatttttgtgcag

Basic information

species Glycine max
transcript GLYMA16G00590.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00590.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G161969_T01 (Zea mays), 5'ss of exon 9
GCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtctacattttttaat-gtagtattgccatcaaatt-tgtgaatcactttaattgtaacatttgttaatttcatttttgtgcag
||||| |||||||||||  | || || ||||| |||||||| ||||||   ||||||| |||||||||||||||  | ||  || | | ||| |       ||  ||| | |    | ||  |   || | |  ||  | ||   || | || |||
GCTGCAGCTTTGGCTCTTAGAAAGGTCCCTCAGTGTAACAGCTCATGGATGAATGATTTTATTCGCCAgtaagttcatatggttcatttgtactggaaaggtcctattatctcgtaccctagagcagttaaaaatggcacttat-ttctggtacag

upper sequence: GLYMA16G00590.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 15
GCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtctacattttttaatgtagtattgccatcaaatttgtgaatcactttaattgt-aacatttgttaatttcatttt-tgtgcag
||||||||  ||||||| || ||||||||||| || || ||||||||| || |||| || || |||||||||||  | ||| | |     ||  ||      || ||||  |||||  |   || |      || ||    || |||| ||| |||
GCTGCTGCACTGGCTCTTCGAAAAGTTCCTCAGTGCAATAGTTCATGGACAGATGAATACATCCGCCAgtaagtacatattctgtttcagag-gttcatgaaaactttgcaaatcatctagtttcttggttcttattttcctccttttatgtacag

upper sequence: GLYMA16G00590.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 15
GCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtctacattttttaatgt-agtattgccatcaaatttgtgaatcactt-taattgtaacatttgttaatttcatttttgtgcag
||||||||||||||||| || |||||||||||||| || ||||||||| | ||||| |||||||| ||||||||      | ||  |||| |  ||||| ||  ||||     ||||| |  | |  |||||||| |   |||     |  | |||
GCTGCTGCTTTGGCTCTTCGAAAAGTTCCTCAATGCAATAGTTCATGGACCAATGACTATATTCGTCAgtaagtaatagatcttagatgttaacattgctatttaattaccatatcacatacactcttaacatttttctttttgggactaatccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10844907|gb|BF071036.1|BF071036
EST:     CGTANAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATCATAATGTGAATATTAATGTTGCTGTGCAGACAGATAATGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtctac ... ttttgtgcagGTATCATAATGTGAATATTAATGTTGCTGTGCAGACAGATAATGGGCTCTT
EST: gi|192329901|gb|FK021487.1|FK021487
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATCATAATGTGAATATTAATGTTGCTGTGCAGACAGATAATGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtctac ... ttttgtgcagGTATCATAATGTGAATATTAATGTTGCTGTGCAGACAGATAATGGGCTCTT
EST: gi|151404893|gb|EV274707.1|EV274707
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATCATAATGTGAATATCAATGTTGCTGTGCAGACAGATAATGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtctac ... ttttgtgcagGTATCATAATGTGAATATTAATGTTGCTGTGCAGACAGATAATGGGCTCTT