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AGGTCGTGTGAGACAGCTTGAGGAAGAGATTAGAGACATTAGACAGAAATACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattttgattatggatttcaaacttggcattgttaaacatgttacatgaagctcttggtttcacctcccattaaaatttcttttgtttctcattt...
species | Glycine max |
transcript | GLYMA15G01980.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AACATCTTCAGCAG GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGTEST: gi|15814203|gb|BI786478.1|BI786478
genomic: AACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAG GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGTEST: gi|21602173|gb|BQ612504.1|BQ612504
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAG GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGTEST: gi|151407143|gb|EV276958.1|EV276958
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: ACAAGCAAGAGTTACAGGAGGCGTTGATGCAAAGGGAACATCTTCAGCAG GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGGAGACTCTACGTEST: gi|17400350|gb|BM177132.1|BM177132
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAG GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGTEST: gi|120530590|gb|EH258723.1|EH258723
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: AACATCTTCAGCAG GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGTEST: gi|9258601|gb|BE346748.1|BE346748
genomic: AACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAG GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTCGTGTGAGACAGCTTGAGGAAGAGATTAGAGACATTAGACAGAAATACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattttgattatggatttcaaacttggcattgttaaacatgttacatgaagctcttggtttcacctcccattaaaatttcttttgtttctcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG