Sequence
atgc intronic sequence ATGC exonic sequenceAACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
Basic information
species | Glycine max |
transcript | GLYMA15G01680.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 5
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|| ||||| ||||| || ||||||||| |||| |||||||| ||||| || |||||||||||| ||||||||||||| || |||| || | || | || | ||||| | ||| | | | || | | | ||||| |||||| || |
AATCTCTATTGGGCCGATAGTGGTGATTTAGTGACAATTGCAAGTGACACCTCATTCTACATTTTGAAGTACAATgtaag--tttttctgcattttgttggctc--tgtagtt---------caatgatgtaacatctacttgatgtaactataacaca-acaattataccttccag------------------------------------------------------------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
||||| || |||||||| || ||||| ||||| |||| || |||||||||||||||||||| ||||||||||| || || || | || | | | ||| |||| | || || | ||| | | | | || || | |||| ||| ||| ||| || | | | || |
AACCTTTATTGGGCTGATAGCGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATACTGAAGTACAACgtaag--ttattgtattatctaaatgttcattatgttatttcttttctcctcttgaatgtgttattgcgtgaaagttctttttttaccatggca--tgaagttatgttt-gta-atttgtgttcctacag--------------------------------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|| || ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||| || |||||||| | || ||| || | | ||||| |||| | |||||| | || | ||| || | ||| ||| |||| | | | | | | | || | | | | | | | | ||| ||
AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACGTCATTCTACATTTTGAAATATAATgtgagttctgtcactgtcttaattgcctatgttcagttgac------ctttcagttacatccactattttttgtcctttttaatgtcaaattaagaagaaattat-ttttctgg---tcaaattgaaatgtattaatacaaaagtttccttttatcttgtag
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|| || ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||| || |||||||| | || | | ||| || || | ||| | | | | || | | | | | ||| || | | | || |||| | | | | ||| || || | | | | | | | ||| ||
AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACGTCATTCTACATTTTGAAATATAATgtgagttctgtcattacctt-attaattgcctatgttcagtcgacctttctgttacatccactgatttgtgtcttttatgt-----caaattaagaagcaatcattttttctgg---tcaaatggacatgtactaacacaaaagtttccttttatcttgtag
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
||| | ||||||||||| |||||||| ||||| |||| || |||||||||||||||||||| || ||||||||||| || || | | ||| | | |||| ||||| || | || | | | | | ||| ||| || || | | ||| |||
AACGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATCCTCAAGTACAATgtaagatattgtat---cgtcaaatgattattatc-ttgtttctttttccttttacccaccttgtgatg-catggcgttataaacaaaatgactat--gatatgtgctttttag------------------------------------------------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacac-acaatttctgctga-atgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|| | ||||||||||| |||||||| ||||| |||| || |||||||||||||||||||| || ||||||||||| || || | | ||| | | |||| || || | || || ||||| ||| | | | || || || | | |||| ||
AATGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATCCTCAAGTACAATgtaagatattgtat---cctcaaatgattattatctagtttctttttccttcttttac---ccacctccttgtgatgatggggattataacacaaaacgagatttgtgctttgcag------------------------------------------------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 15
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgag--gattttcgtgaacttcat---cttttccttatagttgttggct-tgctt-tgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|| | || |||||||||||||||||| | || ||||| || || ||| | |||||||||||| |||||||||||||||| |||||| | | | || | | | |||| || | |||| | ||| |||| || | | ||| | || | || || | | | ||| || || |
AATGTATATTGGGCTGACAGTGGTGATTTGGTGACAATAGCAAGCGATTCGTCATTCTACATTTTGAAGTACAATgtgagttaattttcacatattgtagatactgtagatcacagttttttattgtgctggttaagcacatattgtattctgcaactgacaatggtatgccttgtctattatttac-taacgcaactctaacttgataacatctag---------------------------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 18
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|| || || ||||| ||||||||||||||||| ||||||| |||||||||||||||||||| || |||| |||||||||||| || | || | | |||| ||| | | | | | || | || || ||| | | || ||| || | ||| || || | || |
AATCTTTATTGGGCGGACAGTGGTGATCTAGTTGCAATTGCCAGTGATACATCATTCTACATCCTTAAGTTCAATgtgaggatcttttttaaac---------cttggtagtgagccagaactcttgtacatttccttagtttattttcctagtac------tgttgctgttcgagacatggttttaagctgttttcttactgttctgctgtag-----------------------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttgg-cttgctttgaagaacatcccaccccctccccccaacacaca-cacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|| || || |||||||| ||||||||| ||||| | |||||||||||||| ||||||||||| |||||||||||||||| || | | || | || ||| || | | |||| | | || || | | | | | ||| | |
AATCTTTATTGGGCTGAAAGTGGTGATTTAGTAGCCATTGCTAGTGATACGTCATTCTACATCTTGAAGTACAATgtgagaatctgttcaacctcaaatgttcagctattattttcattcccactttcgtggattgttcaaaagcttactctggtgttcctcgctattacag-------------------------------------------------------------------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|| || || |||||||||||||||||| ||||| | ||||||||||| |||||||||||||| |||| | ||| |||||||| | ||| || ||||| | ||| | || || | | || ||| | ||| || || | |
AATCTATATTGGGCTGACAGTGGTGATTTAGTAGCCATTGCTAGTGACACATCATTCTACATCTTGAAATTCAACgtgaggatcctgtccaacaaacact----cttat-gctgt-gaatttctatatgcgat-tcatggattgtccaagtgcta-acatggtgttcttgttatacag-----------------------------------------------------------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttc-cattattgcag
|| || || |||||||| ||||||||| |||| ||||||| |||||| ||||||| ||||| | ||||||||||| || || || ||| | || ||||| ||| | | | |||| | | | || | | | ||| | | | | ||| ||| | | ||| || || ||| || || | || ||
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctcc----ctttttggttctcttat-----cccacttttatgagaaatcatcataga--tttgtcataaaatctattcgttttacaatcatttgagattaagta---cctcact--taacaacc---aaatatgtttatttggcag--------
upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 14
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
|||||||| |||||||| ||||| ||| | || | ||||| |||||||||||||| ||||| |||||||||||||| |||| || || ||| | | ||| | |||| || | ||| || | | | |||| || |||| || |||| || || | | | | |||| | || | || ||| ||||||
AACCTCTATTGGGCTGATAGTGGGGATTTGGTGGCCATTGCCAGTGATACATCATTTTACATCCTGAAGTACAATgtatggatcctcaaattattaatcctcttttta-acttgtgtaatt-------------------ctcctttcctc------tatagaattg--gccaaatgcatgatttggagcactgcattccaaat-----tgaactttttttaatttaatt-ttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193431246|gb|FK396852.1|FK396852EST: ATCTAGTAACAATTGCTAGCGATACATCATTCTACATTCTGAAGTACAAT CGTGATGTTGTTGTATCACATTTAGATAGTGGAAGACCTGTAGATGATGAA
genomic: ATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattt ... attattgcagCGTGATGTTGTTGTATCACATTTAGATAGTGGAAGACCTGTAGATGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATgtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccattattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG