1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTCACATCTAGGGGATTTGTTGAGGAAGATTTTGAAAAAGTAGCTGAATACTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatcctaccttaccttcgtacatctgaattgttatatttgcagttttaaaagcatagccagtgtcttaacgttacgtaaatcacttttcttcttgatggttacatcaacttcag
species | Glycine max |
transcript | GLYMA14G36280.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGGTTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCEST: gi|151409184|gb|EV278992.1|EV278992
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
EST: CTTTGATGCGGCTGTTAAGTTAGCCTTGCAGATTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCEST: gi|22931163|gb|BU548302.1|BU548302
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
EST: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCEST: gi|209724641|gb|BW651426.1|BW651426
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
EST: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCEST: gi|192315079|gb|FK010449.1|FK010449
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
EST: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCEST: gi|22927473|gb|BU544612.1|BU544612
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
EST: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCEST: gi|192298247|gb|FG992067.1|FG992067
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
EST: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCEST: gi|18710128|gb|BM522477.1|BM522477
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
EST: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTCEST: gi|192315080|gb|FK010450.1|FK010450
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
EST: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATG GTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
genomic: CTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatccta ... tcaacttcagGTACAAAGTTGAAAGATTTTGTGGCAGCTATGCAATCAGATGAACAAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCACATCTAGGGGATTTGTTGAGGAAGATTTTGAAAAAGTAGCTGAATACTTTGATGCGGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGgttgatcctaccttaccttcgtacatctgaattgttatatttgcagttttaaaagcatagccagtgtcttaacgttacgtaaatcacttttcttcttgatggttacatcaacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA