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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAGgtgtgagagaaacctctgcagttcatacaatttttttatttgaacctgaaccatttctttgtagctccccttattgtctgcgtccttgttatatctgtggtaactgtttttgttttgaacagtatatgtacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcag

Basic information

species Glycine max
transcript GLYMA14G06340.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 14
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAGgtgtgagagaaacctctgcagttcatacaattttttta--tttgaac---ctgaaccatttctttgtagct----ccccttattgtctgcgtccttgttatatctgtgg-taact-gtttttgttttgaacagtatatgtacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcag
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GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaaga-atctttttcccaccgtattaatatcaatagtcttttaatttttatttgcag

upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 14
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAGgt--gtgagagaaacctctgcagttcatacaatttttttatttgaacctgaaccatttctttgtagctccccttattgtctgcgtccttgttatatctgtggtaactgtttttgttttgaacagtatatgtacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcag
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GTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACGGATCCTCAGgttagtttgctgcacttttgatactt-tgcaacatattaaactgtggaaggactggtttactaga-------ttcttgttc-cgtaatcacaagaagagtcataaattt---------------------------------------------------------------------------