Sequence
atgc intronic sequence ATGC exonic sequenceATGATGAGAAGAGGTTGAATGCCACTTATATAATCAGTGTTGCACGGAAGCTCGGTTGTTCCATATTTTTGTTACCTGAGGATATTATGGAGgtatgttgcctcttgccacctgagagtttcattcatgtttgctacaaaactgtatacacattagtcttctttgaataaacttcataagtacttataagag...
Basic information
species | Glycine max |
transcript | GLYMA14G02090.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G02090.1 (Glycine max), 5'ss of exon 14
lower sequence: AT4G26700.2 (Arabidopsis thaliana), 5'ss of exon 14
ATGATGAGAAGAGGTTGAATGCCACTTATATAATCAGTGTTGCACGGAAGCTCGGTTGTTCCATATTTTTGTTACCTGAGGATATTATGGAGgtatgttgcctcttgccacctgagagtttcattcatgtttgctacaaaactgtatacacattagtcttctttgaataaacttcataagtacttataagag
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ATGATGAGAAGAGGTTGAATGCTACATACATAGTTAGTGTCGCAAGAAAGCTCGGTTGTTCGGTTTTCTTGTTACCTGAAGATATCGTGGAGgtaagaa---ctgagagactataatgtatcatc---atccgaaatagcaat-tgctcagatgagatgtgttttggtatgttgtgacag------------
upper sequence: GLYMA14G02090.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv19s0090g01440.t01 (Vitis vinifera), 5'ss of exon 13
ATGATGAGAAGAGGTTGAATGCCACTTATATAATCAGTGTTGCACGGAAGCTCGGTTGTTCCATATTTTTGTTACCTGAGGATATTATGGAGgtatgttgcctcttgccacctgagagtttcattcatgtttgctacaaaactgtatacacattagtcttctttgaataaacttcataagtacttataagag
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AGGAAGAGAAGAAGTTGAATGCTACTTACATAATCAGTGTTGCGAGGAAACTTGGGTGTTCTATTTTCTTGTTGCCTGAGGACATCATGGAGgtaaggatgcatctgtattatgttgatttgtttgtttttttattttcttctgtacagatacaaagatttattctaagttgttatcattttctctttatccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11274657|gb|BF324994.1|BF324994EST: CACGGAAGCTCGGTTGTTCCATATTTTTGTTACCTGAGGATATTATGGAG GTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGC
genomic: CACGGAAGCTCGGTTGTTCCATATTTTTGTTACCTGAGGATATTATGGAGgtatgttgcc ... ctcatggcagGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATGAGAAGAGGTTGAATGCCACTTATATAATCAGTGTTGCACGGAAGCTCGGTTGTTCCATATTTTTGTTACCTGAGGATATTATGGAGgtatgttgcctcttgccacctgagagtttcattcatgtttgctacaaaactgtatacacattagtcttctttgaataaacttcataagtacttataagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT