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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCCACTGGAGTTGCCCCTAAGAGAGGAATGGTTCTACCTTTTCAACCACTTGCAATGTCTTTTGATAGTGTTAATTATTATGTGGACATGCCTGCTgtaagaaccctatcacttttttccaatataacttcatactaccattcataattagtggtaaatataaaggaagtgttaacttttaacag

Basic information

species Glycine max
transcript GLYMA13G43140.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G366146_T01 (Zea mays), 5'ss of exon 10
-ATCAGCCACTGGAGTTGCCCCTAAGAGAGGAATGGTTCTACCTTTTCAACCACTTGCAATGTCTTTTGATAGTGTTAATTATTATGTGGACATGCCTGCTgtaagaaccctatcacttttttccaatataacttcatactaccattcataattagtggtaaatataaaggaagtgttaacttttaacag--------------------------
   |||| | || ||  || |     ||||| |||||||| || ||  | || ||||| ||||||||||||| ||| ||||| ||||| ||||||||||| || ||  | |  ||| || ||  ||  |    ||| |    |||||  | |    |  | ||| |    | |  || || | |  | |                           
TGGCAGCAA-TGAAGCCGCTCTGTCAAGAGGCATGGTTCTTCCATTCAACCCTCTTGCCATGTCTTTTGATAATGTGAATTACTATGTCGACATGCCTGCGgtgagttcaccttcaattattctcagcaatttttcctgtc-ccatttgttacct-tcctcaatgtgcttgtatcgtcaaatatggaaactgatggaaaactccgttgtttcccag

upper sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 14
-ATCAGCCACTGGAGTTGCCCCTAAGAGAGGAATGGTTCTACCTTTTCAACCACTTGCAATGTCTTTTGATAGTGTTAATTATTATGTGGACATGCCTGCTgtaagaaccctatcacttttttccaatataacttcatactaccattcataattagtggtaaatataaaggaagtgttaacttttaacag---------------------------
   |||| | || || ||| || |  |||||||||||||| || ||  | || ||||| ||||||||||||| ||| || || ||||| ||||||||||| || ||    |  ||   | ||  ||  |    ||| |    |  ||| ||  |  |  | ||| |    | |  || || | |  | |                            
TGGCAGCAA-TGAAGCTGCTCCAACAAGAGGAATGGTTCTTCCATTCAACCCTCTTGCTATGTCTTTTGATAATGTGAACTACTATGTTGACATGCCTGCGgtgagttgaccttcgagtattctcagcagttgttcctgtcccatttcttaccttct--tcaatgtgcttgtacggtaaaatatggaaactgatggggaattctattgtttgcccag