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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgcaatcatttggagaattaccagtttataattttttttaattactatggtttcttttaattttctaatgttgattccctttgttgaacatgcaacag

Basic information

species Glycine max
transcript GLYMA13G29010.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 13
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgcaatcatttggagaattaccagtttataattttttttaattactatggtttcttttaattttctaatgttgattccctttgttgaacatgcaacag
|||||| |  ||||||||||| || |||||||| ||||| || ||| || |||| || ||||||||||||||||| || |||||||| || || |||||||||||  |       ||     |||  | |  |   ||||||   ||    || || |   || | | ||| || | |                           
AAGCTTCCTCGATATCAAGGAATCGACTGGTATTGAGGATAAAGAATTGCGAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctctttattttatccaaatgtctaact---aattttcagtagcagct-tgttcagttgtcacttt-tattttcag------------------------

upper sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 14
lower sequence: AC177936.6_FGT008 (Zea mays), 5'ss of exon 1
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtg--------tttgcaatcatttggagaattaccagtttataattttttttaattactatggtttcttttaattttctaatgttgattccctttgttgaacatgcaacag
|||||| |  || ||||| || || |||||||| ||||| || ||| ||||| |||| |||||||| ||||||||||| |||||||| || || |||||||||||        ||||  |||||     | |||  |||| |  |  || ||| ||||   ||   |  ||| |                                       
AAGCTTCCTTGACATCAAAGATTCCACTGGTATCGAGGATAAAGAATTGAGACGGACACTGCAATCGCTTGCATGTGGTAAAGTTCGGGTTCTCCAAAAGgtgtgatcctttttttgtcatcatcatttgcattttcagtatgcagcttcttt-aattgtaatctatgttttcag--------------------------------------

upper sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 14
lower sequence: AC155496.2_FGT009 (Zea mays), 5'ss of exon 13
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgcaatcatttggagaattaccagtttataattttttttaattactatggtttcttttaattttctaatgttgattccctttgttgaacatgcaacag
||||||    || ||||| || || |||||||| ||||| || ||| ||||| | ||  ||||||| ||||||||||| |||||||| || || |||||||||||||     |  ||||    ||   || |||  |    |||| | |   |   | |||||| |   || |||  ||  ||  |                   
AAGCTTCATTGACATCAAAGATTCCACTGGTATCGAGGATAAAGAATTGAGACGAACATTGCAATCTCTTGCATGTGGTAAAGTTCGGGTTCTCCAAAAGgtgtgttcctttttttttgccccatcgtcattttgca----ttttcagta--tgcagcttctttaa---ttgtaacctttgttttcag-----------------

upper sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 13
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgcaatc---atttggagaattaccagttta--taatttt----ttttaattactatggtttcttttaattttctaatgttgattccctttgt-tgaacatgca-acag
 |||||| |||| || || || || ||  | |||||||||||||| ||||| |||||| |||| || ||||| ||||| ||||| |||||||| || ||||| ||     ||||   | |  |  || |  |  || |  ||||        |      | ||||| ||    |  ||   ||| | | |  |   |||| | || ||     |||
TAGCTTTGAAGACATTAAAGATTCCACCAGCATAGAGGACAAGGAGCTGAGGAGGACTTTGCAGTCGCTTGCTTGTGGGAAAGTCCGTGTCCTGCAGAAGgtttggccaaaatctggactctgttaactctcttttcagctaatgcagaaactgccgagattatggctttgcctttttccataaggataagccttattgtgtaaatatttttgcag

upper sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 13
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtg--------tgtttgcaatcatttggagaattaccagtttataattttttttaattactatggtttcttttaattttctaa--tgttgattccctttgttgaacatgcaacag---------------
 |||||||||||||| |||||||||||||| || ||||| |||||  |||||||||||||||| || |||||||||||||||||||||||||| |||||||||        ||   | |||  | ||   | ||     | ||||  | ||| | | |   |       ||  || ||  | |  | ||   |   ||| |||       || |                
TAGCTTTCAAGATATTAAGGACTCTACTGGCATTGAGGATAAGGAGTTGAGAAGGACTCTGCAGTCCCTTGCATGTGGAAAAGTTCGTGTCCTTCAAAAGgtgaggggttatggcaggaattgtgtgttcattttgatatatatatatatttatcactttcagatagaattacaaattggtgagcttttaccttgttttcttgtctgcaaaatattatatttgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018820|gb|CX705562.1|CX705562
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgc ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
EST: gi|19053161|gb|BM731828.1|BM731828
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgc ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGA
EST: gi|58019102|gb|CX705844.1|CX705844
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgc ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
EST: gi|9901230|gb|BE610198.1|BE610198
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgc ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
EST: gi|16344141|gb|BI969736.1|BI969736
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgc ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA