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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcagatgcatctacctttatgtattccacttcaatattttgtcataaaattttattgatattggtttactgcag

Basic information

species Glycine max
transcript GLYMA13G21480.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21480.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 14
GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcagatgcatctacctttat--------gtattccacttcaatattttgtcataaaattttattgata----ttggtttactgcag--------
||||| ||||||||||| |||||| | ||||||||||||||||||| |||| | ||||| ||||| ||| |  ||||||| || || |||||  |||||||   | |   |     |  |         |||   | | ||| || ||  || |   |||| ||| |||     |  |||| ||  |        
GTTGTAGCAGCTGTTGGTTTTAAGGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTGGCTTCCATAATTGAAGCATGTTGGGCAAAgtgagtgacggtttttgattatacaaaaaaaatagtaggtcccatcactaattgatctttccatttcattaataagaacttttttattgtggtattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708993|gb|BW653507.1|BW653507
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|21888649|gb|BQ741862.1|BQ741862
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|51335181|gb|CO979047.1|CO979047
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|51344716|gb|CO985449.1|CO985449
EST:     CATGATGTGAATCCCCAAGTAGTTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|7029568|gb|AW459409.1|AW459409
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|15204014|gb|BI426782.1|BI426782
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|254346794|gb|GR856516.1|GR856516
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|209717222|gb|BW657691.1|BW657691
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|254314006|gb|GR831635.1|GR831635
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcagatgcatctacctttatgtattccacttcaatattttgtcataaaattttattgatattggtttactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC