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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAGGACGTCCAACTTTAGACTCCCTGCTGATAATAAAGTGCCTATAATCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAGgtttataatcaacttgatatttgatctcctaattctttctcatccatctactatgctaattatttattttgttttttatttgcacttcag

Basic information

species Glycine max
transcript GLYMA13G00990.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 14
TGTTAGGACGTCCAACTTTAGACTCCCTGCTGATAATAAAGTGCCTATAATCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAGgttta---taatcaacttgatatttgatctcctaattctttctcatccatctactatgctaattatttattttgttttttatttgcacttcag--
|||||||   |||||||| | ||| |||||||||| |  |||||| || ||||||||||| || ||||| |||||||||||||| ||||||||| |||||||||    | |   ||||||   || | |  ||    | |||| |   || || |     ||     |    || ||| | ||| || ||||   
TGTTAGGCAATCCAACTTCAAACTTCCTGCTGATACTTCAGTGCCGATTATCATGATTGGCCCTGGCACCGGATTAGCTCCTTTTAGGGGTTTCCTGCAGgttttaattgacagacttgaccatttagcgacttcggccttcttacttat-tattgcttcaaccgactgacctgatttatgttttcatttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209728345|gb|BW659982.1|BW659982
EST:     CATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTC-TGNCAG                         GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTT
genomic: CATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTG-CAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTT
EST: gi|254318721|gb|GR828665.1|GR828665
EST:     TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
genomic: TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
EST: gi|209729002|gb|BW655032.1|BW655032
EST:     TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAG                         GAAAGATTAACTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
genomic: TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
EST: gi|6914702|gb|AW396232.1|AW396232
EST:     AGCTCCTTTCAGGGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
genomic: AGCTCCTTTCAGGGGTTTCTTGCAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
EST: gi|4313809|gb|AI460928.1|AI460928
EST:     TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
genomic: TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA