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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtgtacttttgatttgttaagaaccatttaattatgtatagatgcagtaagttgaattgcttttcaaactttacag

Basic information

species Glycine max
transcript GLYMA13G00980.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 14
GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtgtacttttgatttgttaagaaccat-----------ttaattatgtatagatgcagtaagttgaattgcttttcaaacttt-acag
|| || |||||||||||||||||||| || ||||| ||||||||||| |   | |   ||    ||  ||| |  ||            |||||  || ||      || |   ||||| ||  ||     | | ||||
GCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAGgtatttcctatttcttccccttaataaaatacacattttaaatagttaatattgaattaccataggagactgaatcgccattttgtttctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236681|gb|BE805569.1|BE805569
EST:     GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|207815553|gb|GD789138.1|GD789138
EST:     AATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: AATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|31472899|gb|CD414927.1|CD414927
EST:     GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|51344846|gb|CO985579.1|CO985579
EST:     GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|208149082|gb|GD945938.1|GD945938
EST:     AATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: AATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG