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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTATGCTGCGGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAGgtttgtgtgtttccactgccattctttaattatctggatgctactaatattgtacggacaatattttcattaaatgccccttgttgatgatggcttctaa...

Basic information

species Glycine max
transcript GLYMA12G30520.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os03g02150.2 (Oryza sativa), 5'ss of exon 14
CCTTATGCTGCGGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAGgtttgtgtgtttccactgccattctttaattatctggatgctactaatattgtacggacaatattttcattaaatgccccttgttgatgatggcttctaa-----
|| |||||||| ||||| ||| ||||||| || ||||| |||||| | ||||| |||||||||||||| | |      ||    |   |       ||||  ||| ||   |    |       || |||||    ||| || |  |  ||  | |||  ||||       
CCATATGCTGCAGCAAAGGCTAGAGAATACCTCGACAAGCCTGCTTTGCATGAAACAATGGTTAAGgtattttcaccacctgaactcatacagttgtatcatgattctgtgaggtctaatttttcagtatttc---taagtgactttgatt--ttatgaattctgctctac

upper sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 15
CCTTATGCTGCGGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAGgtttgtgtgtttccactgccattctttaattatctggatgctactaatattg-tac-ggacaatattttcattaaatgccccttgttgatgatggcttctaa-
 | || |||||  | |||||  |||||||||||||||| |||||| |||||||||| ||||| ||||| | | |   ||  |||   || |   ||| |    |    | | |    | |||  ||  |||||    || | ||   | || |    |       ||  
TCATACGCTGCAACTAAAGCGAGAGAATATCTTGACAAGCCTGCTTTACATGAGACGATGGTCAAGgtattttt-catcagctgaatttgtggtattgtgaaaactgaatttacggagctactagatgatattaattttcattgaaacatgatat--acaatccttagt

upper sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 14
CCTTATGCTGCGGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAGgtttgtgtgtttccactgccattctttaattatctggatgctactaatattgtacggacaatattttcattaaatgccccttgttgatgatggcttctaa--
|| ||||| || ||||| ||  |||| ||||||||||| |||||||| |||||||||||||| ||||| ||| | ||  | ||   | |  ||  |  | | |||  || |   |||     ||   ||     | ||   | |  |  |   |    |||  |||  
CCCTATGCAGCAGCAAAGGCAAGAGAGTATCTTGACAAGCCTGCTATCCATGAGACAATGGTCAAGgtgtgtatcttctccctattacttgtttctattttagat--taattgcatttggaagagtgtacaaggactattaggcgatgatgatttcaagctgataatt