Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCAGTGTCACATTTGACTTGCTGTTGCTTCTAGTGCTGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctttttatcatctaacgtcattttcaaaactttaggtatccaatttgtatgcactcaatcttaatggatgctgtttgacag

Basic information

species Glycine max
transcript GLYMA12G09710.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09710.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 13
GTTGCCAGTGTCACATTTGACTTGCTGTTGCTTCTAGTGCTGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctttttatcatctaacgtcattttcaaaactttaggtatccaatttgtatgcactcaatcttaatgg-atgctgtttgacag---------------------------------------------------------------------------
||||| ||||| |||||||||||  ||||||| |||||||||||||| |||||||| ||||||||||| ||  | |||||||| ||||||||||  | |  |    |  |   |  |   | |  ||   | | |  |   | |    |  ||  | ||    ||   ||| |||                                                                            
GTTGCTAGTGTAACATTTGACTTATTGTTGCTCCTAGTGCTGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctcttttctttccaaaacctagcatatcttttattttccctaaatgtctgtttcataatgatcatgtgtacttttacaaattagtgcccttgtagactgaatggaatggaaaaataaaagtaatctaaacattctaacaatgctattgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691375|gb|AW759433.1|AW759433
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatcttttt ... tgtttgacagGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|17518642|gb|BM187684.1|BM187684
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatcttttt ... tgtttgacagGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTG