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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGTGCTCCTCCTAGTGGTCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGgttattttacttagttcttgtttcaaaattatatactttatattttctttccttatatactgtaatatgtactatgtattctgatgttgctttcttatcag

Basic information

species Glycine max
transcript GLYMA12G04820.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193330817|gb|FK293747.1|FK293747
EST:     GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAG                         TCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAAT
genomic: GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGgttattttac ... ttcttatcagTCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAAT
EST: gi|16106401|gb|BI894141.1|BI894141
EST:     GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAG                         TCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAAT
genomic: GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGgttattttac ... ttcttatcagTCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAAT
EST: gi|298193333|gb|HO033767.1|HO033767
EST:     GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAACTTTTTAAG                         TCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAAT
genomic: GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGgttattttac ... ttcttatcagTCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAAT
EST: gi|193471807|gb|FK434836.1|FK434836
EST:     GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAG                         TCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGA
genomic: GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGgttattttac ... ttcttatcagTCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGA
EST: gi|33390701|gb|CA853896.1|CA853896
EST:     GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAG                         TCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAAT
genomic: GGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGgttattttac ... ttcttatcagTCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGGGTGCTCCTCCTAGTGGTCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGgttattttacttagttcttgtttcaaaattatatactttatattttctttccttatatactgtaatatgtactatgtattctgatgttgctttcttatcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT