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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgtttttttattcctgtagaaggacaattgtgtttttggaaatttaggcttgttatatttggtgctgaacctgtatgatgctattttcag

Basic information

species Glycine max
transcript GLYMA12G03640.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 5'ss of exon 14
ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgtttttttattcctgtagaaggacaattgtgtttttggaaatttaggcttgttatatttggtgctgaacctgtatgat----gctattttcag
 |||||||||| | |||||| ||||| || || ||||| || || |||||||||||||| ||  |||||||||| || ||     ||| |     | | |||  |    ||   |||    ||| | |||||  | |  |   ||| |  |    |   |||||||
GCTGAGACACTTGTTGATCACATAAAGTTCGATCATGGATACACCGCCAAGAGCCCTGCAATCATTAATgtatgcttcttc---tctggatttacaaagttg-atgcaagggggttttattttgctttatttcattcatatgatgtcttgtttctgaccttttcag

upper sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 14
ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgtttttttattcctgtagaaggacaattgtgttt--ttggaaatttaggcttgttata--tttggtgctgaacctgtatgatgctattttcag-------------------
|  |||||||| | |||||| ||||| ||||| ||||| || ||||||||||||||||| ||  | |||||| | || ||  |   | | |   | || |||  |||  | |||||    |  |  | |||  | |  |       ||| |||||  | |||   |                   
ATGGAGACACTTGTTGATCACATAAAGTTTGATCATGGATACACTGCCAAGAGCCCTGCGATTATCAATgtaagattcttcctatatttgg---ggcatttggatttagtgggaaacagggtgtaatgataactcttatatattgactgcatgat-ttgtttattgtaatgcctttgctttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208074756|gb|GD869541.1|GD869541
EST:     ATAT-AAATTTGA-CATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
EST: gi|193449879|gb|FK413498.1|FK413498
EST:     ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACTAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
EST: gi|9259017|gb|BE347164.1|BE347164
EST:     ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
EST: gi|15815265|gb|BI787540.1|BI787540
EST:     ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
EST: gi|192314633|gb|FK008141.1|FK008141
EST:     ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
EST: gi|192327460|gb|FK017817.1|FK017817
EST:     ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
EST: gi|51335365|gb|CO979231.1|CO979231
EST:     ATATAAAATTTGACCATGGTTATACTGCCAAGAGCNNTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
EST: gi|254331304|gb|GR845883.1|GR845883
EST:     ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
EST: gi|192314634|gb|FK008142.1|FK008142
EST:     ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT                         TTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT
genomic: ATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATgtatgttttt ... ctattttcagTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGT