Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGGgtatgttttacttgttcaatattcttaatctttattacattgtaaactattagactatttgttttgatcacttttcttatgattgtagattatggtattaatgaagaatctgtattttgataatgaaatttgttgatgttcaaatgttgttggtgctag

Basic information

species Glycine max
transcript GLYMA11G37770.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024808|gb|CX711549.1|CX711549
EST:     GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGGgtatgtttta ... ttggtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|51337681|gb|CO981547.1|CO981547
EST:     GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGGgtatgtttta ... ttggtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|57574426|gb|CX547401.1|CX547401
EST:     GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGGgtatgtttta ... ttggtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|16996411|gb|BM085783.1|BM085783
EST:     GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG                         GTGAGGGAGCGGTGTA
genomic: GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGGgtatgtttta ... ttggtgctagGTGAGGGAGCGGTGTA
EST: gi|192315451|gb|FK009225.1|FK009225
EST:     GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGATCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGGgtatgtttta ... ttggtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
EST: gi|57574192|gb|CX547167.1|CX547167
EST:     GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG                         GTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA
genomic: GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGGgtatgtttta ... ttggtgctagGTGAGGGAGCGGTGTAGAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCA