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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCATAAAAGTATGTGGTGAGAAGAATGTCCTACCCTCATCAACAAATCCCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGgtatgcaacaaatcacaaaagtaatagtgtacagcttgtgctatttggctcttaatttgcgctcgtatgatgtacag

Basic information

species Glycine max
transcript GLYMA11G37250.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 13
TATCATAAAAGTATGTGGTGAGAAGAATGTCCTACCCTCATCAACAAATCCCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGgtatgcaacaaatcacaaaagtaatagtgtacagcttgtgctatttggctcttaatttgcgctcgtatgatgtacag
|||||| ||||||||||||| ||| ||||| ||||||||||| ||||| || ||||| ||||  ||    ||||||||||||||||| || |||||| ||||||| || | || |  ||  || ||  |||    ||  |  | ||| ||  ||| |||   ||  || |  | |||
TATCATCAAAGTATGTGGTGTGAAAAATGTTCTACCCTCATCCACAAACCCAACACGGCCTTTCACTTCCAATACCATAGATGAGCACCTTGACATGCTGgtatg-aaaagattatgaagata-tatggtaactttttggacagttgacttgtaaattga--tctgattacatgcag

upper sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S274_69V6.1 (Physcomitrella patens), 5'ss of exon 13
TATCATAAAAGTATGTGGTGAGAAGAATGTCCTACCCTCATCAACAAATCCCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGgtatgcaacaaatcacaaaagtaatagtgtacagcttgtgctatttggctcttaatttgcgctcgtatgatgtacag------------------------
 ||||| ||||| |||||   |   ||| |  | || || ||||||||||||||| | ||||| |||   |||||||||||||| ||||| |||||| |||||   | |    |      | |||  || | ||  ||| |    | ||   |     ||  |  | |  | |||                          
CATCATTAAAGTCTGTGGGTTGCCTAATATTTTGCCATCTTCAACAAATCCCACAAGGCCTTACACAGTCAATACCATAGATGAACATCTTGACATGCTGgtactgagctggactgttttgcaatcttg-agagaatgttcatcctagcatgtggccagcatttcttttctctactagatgaactgcttcaaagggagtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405862|gb|EV275677.1|EV275677
EST:     CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTG                         ATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCT
genomic: CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGgtatgcaaca ... tgatgtacagATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCT
EST: gi|16278014|gb|BI942681.1|BI942681
EST:     CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTG                         ATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTGTTGCT
genomic: CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGgtatgcaaca ... tgatgtacagATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCT
EST: gi|151402941|gb|EV272754.1|EV272754
EST:     CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTG                         ATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCT
genomic: CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGgtatgcaaca ... tgatgtacagATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCT
EST: gi|151394452|gb|EV264323.1|EV264323
EST:     CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTG                         ATGGTCTGCCATCATCTTAATAAGAATATTCCA
genomic: CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGgtatgcaaca ... tgatgtacagATGGTCTGCCATCATCTTAATAAGAATATTCCA
EST: gi|33388630|gb|CA851837.1|CA851837
EST:     CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTG                         ATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCT
genomic: CCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGgtatgcaaca ... tgatgtacagATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCT