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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTTGACAATCTTGGTGAGAATCAATTGTTCTGGGGCCAAAGACCACTTCAAgtatgattcacttctttgcttctttattgcttaataattcttgttccatttcatattttacattattctgaattactgttcatgatatgcag

Basic information

species Glycine max
transcript GLYMA11G15730.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 14
CTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTTGACAATCTTGGTGAGAATCAATTGTTCTGGGGCCAAAGACCACTTCAAgtatgatt--cacttctttgcttctttatt--gcttaataattcttgttccat---ttcatattttacattattctgaattactgttcatgatatgcag
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TTCTCAAGCTGATCTCTATCATGTGATGATCTACATGTTCTTGAGCCCCACTGACAATCTTGGTGAGAATCAGTTGTTTTGGGGCCAGAGACCACTCCAAgtatgatttccattcttttgactattgatgcagactagacatactttatccttatgtttttagtcttctttatggttgattaatgcttgattcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258597|gb|BG881505.1|BG881505
EST:     TTGACAATCTTGGTGAGAATCAATTGTTCTGGGGCCAAAGACCACTTCAA                         GTTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCA
genomic: TTGACAATCTTGGTGAGAATCAATTGTTCTGGGGCCAAAGACCACTTCAAgtatgattca ... tgatatgcagGTTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCA