1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATATGGAGGTAGAGTTGAGAAGACTATCATACCTCAAGCAAACGTTTTCCCAAGGCAATCAGACTGTGGAAGATGGACGAACCCTCGCACCTGAGTTAAGgtattgaggttttattaaattcttttgcagatctttaaattgaaattttacacttagtaaaataatagaacttacaaggtacaatgtctttcacttgaaaacag
species | Glycine max |
transcript | GLYMA11G07950.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAAGGCAATCAGACTGTGGAAGATGGACGAACCCTCGCACCTGAGTTAAG CATGAGATATCTTAGAAAAGAGAGGCAGATGCTGAGCAAGCAAATGCATAAEST: gi|207756779|gb|GD730563.1|GD730563
genomic: CAAGGCAATCAGACTGTGGAAGATGGACGAACCCTCGCACCTGAGTTAAGgtattgaggt ... ttgaaaacagCATGAGATATCTTAGAAAAGAGAGGCAGATGCTGAGCAAGCAAATGCATAA
EST: CAAGGCAATCAGACTGTGGAAGATGGACGAACCCTCGCACCTGAGTTAAG CATGAGATATCTTAGAAAAGAGAGGCAGATGCTGAGCAAGCAAATGCATAAEST: gi|193411923|gb|FK380374.1|FK380374
genomic: CAAGGCAATCAGACTGTGGAAGATGGACGAACCCTCGCACCTGAGTTAAGgtattgaggt ... ttgaaaacagCATGAGATATCTTAGAAAAGAGAGGCAGATGCTGAGCAAGCAAATGCATAA
EST: CAAGGCAATCAGACCGTGGAAGATGGACGAACCCTCGCACCTGAGTTAAG CATGAGATATCTTAGAAAAGAGAGGCAGATGCTGAGCAAGCAAATGCATAA
genomic: CAAGGCAATCAGACTGTGGAAGATGGACGAACCCTCGCACCTGAGTTAAGgtattgaggt ... ttgaaaacagCATGAGATATCTTAGAAAAGAGAGGCAGATGCTGAGCAAGCAAATGCATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGGAGGTAGAGTTGAGAAGACTATCATACCTCAAGCAAACGTTTTCCCAAGGCAATCAGACTGTGGAAGATGGACGAACCCTCGCACCTGAGTTAAGgtattgaggttttattaaattcttttgcagatctttaaattgaaattttacacttagtaaaataatagaacttacaaggtacaatgtctttcacttgaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA