Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTTTGTCTGTTCATGTCCACCAGTTGCTCGAGAGTCTACCAAAGATCTTTACCATCTTATTTTCCCTTCATTGAAATCAGGATCTGATGTTCACGTTgtaagagagcctcacttaacttatccattagtctatcttcataagcagtctatgtcaaagcatgaagagttgcatgcatacttgatgtattgtttagtac...

Basic information

species Glycine max
transcript GLYMA11G06550.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06550.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv14s0083g00750.t01 (Vitis vinifera), 5'ss of exon 14
CATGTTTGTCTGTTCATGTCCA--CCAGTTGCTCGAGAGTCTACCAAAGATCTTTACCATCTTATTTTCCCTTCATTGAAATCAGGATCTGATGTTCACGTTgtaagagagcctcacttaacttatccattagtctatcttcataag---cagtctatgtcaaagcatgaagagttgcatgcatacttgatgtattgtttagtac
  ||    | || |  |    |  | ||  ||| | | | |  | ||||||||||||||||||||||| || ||| | ||||| |||||||| |  ||| | |||||        | | ||   |     | |||   | | ||| |    |   |  ||  |    |   ||  |   |  ||  |  | |      ||  |  
-GTGCCCATTTGATAGTAGAGAAGCTAGCAGCTTGGGTG-CAGCTAAAGATCTTTACCATCTTATTTTTCCCTCACTAAAATCTGGATCTGAGGCACACATAgtaagcacatgctaat-aagaaactttcttgtcagccattatatgatttatcttgagtggagttttagtgacctaattatat-ttaaaagagcaaatttctg-