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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGAGTACGTCTTATTTTGTCTGGAGCCGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTTACTTGTGCTCATGTCCTACAAGGATATGgtatactctttttaaatatgaaaatcagacttacaccatactatcattttttaaaaatcatgtcattaaacaaattgtaaatactcccattttagttatg...

Basic information

species Glycine max
transcript GLYMA11G02030.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02030.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g46750.1 (Oryza sativa), 5'ss of exon 14
GGTAGAGTACGTCTTATTTTGTCTGGAGCCGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTTACTTGTGCTCATGTCCTACAAGGATATGgtatactctttttaaatatgaaaatcagacttacaccatac-tatcattttttaaaaatcatgtcattaaacaaattgtaaatactcccattttagtta-tg-
|| |  || ||| |||||||||| ||||| || ||  |  || | ||||| ||||  ||| |  | ||||| |||||||| |||||| |||||||||||||||||   || ||   |||     |         |  |||  |  |     | | |    | || ||     |   | || |||     |||  | | | || 
GGAAATGTTCGTGTTATTTTGTCCGGAGCTGCTCCACTTGCTACTCATGTTGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATGgtatatctttgtttgttatctttgtagagaaagtaggatagatgcctcacctaagaggggaggtgatctctta---tatatatagctgaattacaatgaatgc

upper sequence: GLYMA11G02030.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 14
GGTAGAGTACGTCTTATTTTGTCTGGAGCCGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTTACTTGTGCTCATGTCCTACAAGGATATGgtatac--tctttttaaat--atgaaaatcagacttacaccatactatcattt-tttaaaaatcatgtcattaaacaaattgtaaatactcccattttagttatg------------------------------------------------------------------------------------------
|| |  ||||| |||||||| ||||||||||||||  | ||| | |||||||||| |||  |||| ||||| |||||||||||||| ||||||||||||||||| |  ||  || ||||   ||   | | | ||||  |  |   |   ||| |||   || |||   | |  | |  | ||    ||         |  ||||                                                                                          
GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag