Sequence
atgc intronic sequence ATGC exonic sequenceATTGTGGCATTTCTTGTCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTATTCAGgtatgaatgtattttgtcccctcatctgctattgcacagctatgtttattttggcactgatgcttttacagttctaatgttctataagattttggtctct...
Basic information
species | Glycine max |
transcript | GLYMA10G42960.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 14
ATTGTGGCATTTCTTGTCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTATTCAGgtatgaatgtattttgtcccctcatctgctattgcacagctatgtttattttggcactgatgcttt-tacagttctaatgttctataagattttggtctct---
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ATTGTTGCCTTCCTAATCCCACTTCTTGATGATAAATTTCCTCTTATACGGAGTATTACGTGTTGGACGCTCTCTCGATATAGCAAATTCATTGTTCAGgtaacatgacacattagttcc----ctgatattattctttttttttcgaaaacgcaggagagctgcgtatcattatattaagaggaaaaaggtgaggatagaaa
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G312026_T01 (Zea mays), 5'ss of exon 14
ATTGTGGCATTTCTTGTCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTATTCAGgtatgaatgtat-tttgtcccctcat-ctgctattgcaca-gctatgtttattttggcactgatgcttttacagttctaatgttctataagattttggtctct
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ATTGTTGCCTTTCTAATCCCACTTCTTGATGATAAATTTCCTCTTATACGGAGTATTACGTGTTGGACGCTCTCTCGATACAGCAAATTCATTGTTCAGgtaacatggcacatttgttccctgatattattcttattcttgccatcccagggtttcagcggaaactcattatgttcaaatcattt-taaggatgtggagt--
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 14
ATTGTGGCATTTCTTGTCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTATTCAGgtatgaatgtattttgtcccctcatctgctattgcacagc---tatgtttattttggcactgatgcttttacagttctaatgttctataag-attttggtctct
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ATTGTGACATTTATTATTCCCCTCTTGGATGATAAGTTTCCTCTCATACGAAGTATTTCCTGTTGGACACTTTCACGTTTCAGCAGATTTGTTGTTCAGgtatgagagaaattccttctactagttgctttgccacagcaagtgtttttgcctacatcttaatgcactttcactttgtatggagaaaaattattatgat----
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g00910.t01 (Vitis vinifera), 5'ss of exon 14
ATTGTGGCATTTCTTGTCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTATTCAGgtatgaatgtattttgtcccctcatctgctattgcacagctatgtttattttggcactgatgcttttacagttctaatgttctataagattttggtctct----
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ATTGTGGCTTTTCTCATCCCCCTTTTAGACGATAAATTTCCTTTGATACGAAGTATTACTTGCTGGACCCTTTCTCGGTTTAGCAAATTCATTGTTCAGgtacaattataa---atacattattcttccattttatagttgaagctgtgaacttttccatgtatttcttgttcatgaatcct-taacatgttgtgtttgaggcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192327364|gb|FK019581.1|FK019581EST: GAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTATTCAG GGTATTGGGCATCCGAAAGGCTATGAACAGTTTGATAATGTTCTTATGGGT
genomic: GAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTATTCAGgtatgaatgt ... tgtgtcttagGGTATTGGGCATCCGAAAGGCTATGAACAGTTTGATAATGTTCTTATGGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTGGCATTTCTTGTCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTATTCAGgtatgaatgtattttgtcccctcatctgctattgcacagctatgtttattttggcactgatgcttttacagttctaatgttctataagattttggtctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc