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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattcattgctatgatttatgatttcataatcccaaactgtttttttcttgttgaatgcctcatggatgccaactgttttggcttttgaatgtttctatgcag

Basic information

species Glycine max
transcript GLYMA10G42220.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattcattgctatgatttatgatttcataatcccaaactgtttttttcttgttgaatgcctcatggatgccaactgttttggcttttgaatgtttctatgcag
|||||  ||||||| ||||| ||||||||||| ||| ||||||| |  || || |||||||| ||||||||||| ||||| |||||||| || || |||||| |||||| ||  | ||     || ||  | |  |     |||  |  ||  | ||  |    || |||    |   ||  || | ||       ||| ||||| |||||
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgc---acttcattttgttgtgtattcaatattcttcctactgttattctgtctc-catactacatgtggtctgatgcac-aatttttct-tgcag

upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 8
AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattcat--tgctatgatttatgattt-cataatcccaaactgtttttttcttgt-tgaatgcct-catggatgccaactgttttggcttttgaatgtttctatgcag----------------------
|||||  | ||||| ||||| ||||| ||||| ||| |||||||||  ||||||||||| || |||||||| || ||||| ||||| || || || || ||| |||||  |||||  ||| ||| |||  ||||| | |  |  |  | |  |  | | |||| || ||   |  ||  ||    | | | |     | |  || | | ||||                         
AATGTGCTCAAGCTATGTGATTTTGGGAATGCTATGCTTGCTGGTATGAATGAAGTTACGCCTTATCTTGTTAGCCGTTTCTATCGGGCACCTGAGATCAgtgagttct-ttcatcctgcaatgtttttagattttctttcttacttagtactcatatgttgtctgtatatatatatatatatata-tatatatatatatatatatatatatgtgacaactaacatgttttcttgcag

upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattcattgctatgatttatgatttcataatcccaaactgtttttttcttgttgaatgcct-catggatgccaactgttttggcttttga-atgtttctatgcag
|||||  | ||| | ||||| |||||||| || ||| |||||||||  ||||||||||| || |||||||| || ||||| ||||| || || || ||  || |||||  |||||   ||      ||| ||| | | |||    ||  ||| | ||  |    || ||  ||| ||   | ||   |     |   | ||||||   |||||
AATGTGCTCAAGGTATGTGATTTTGGCAACGCTATGCTTGCTGGTATGAATGAAGTTACGCCTTATCTTGTCAGCCGTTTCTATCGGGCACCTGAGATCGgtgagttct-ttcatctttacctgggatgtttttagattcctttcctactttatgctcatatgttgtctgtatgcatcttacctacctatatatgaaacatgttttcttgcag

upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattcattgctatgatttatgatttcataatcccaaactgtttttttcttgttgaatgcctcatggatgccaactgttttggcttttgaatgtttctatgcag
||    || ||||||||||||||||| | ||| ||||||||||||| ||| |||||||||||||||||||| ||||| || ||  | || || ||||||||||||||||| |  ||||| |      ||  || || |||  |    | | |||  | | || |||    ||  ||  | |  | | |    | |   | ||||  || ||
AACACGTTAAAGCTTTGTGACTTTGGTAGTGCAATGTTTGCTGGTACAAACGAAGTTACACCATATCTTGTTAGTCGCTTCTACAGAGCTCCAGAAATAAgtaagttccact-gttgctgt------tgtcttaatcatct-acttggatatttcatggctgtatgttctatt-ataactaaagctgtactctct---tttttcattgtag

upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattcattgctatgatttatgatttcataatcccaaactgtttttttcttgttgaatgcctcatggatgccaactgttttggcttttgaatgtttctatgcag
||||| || ||||||||||| ||||| ||||| |||||||| || ||||| ||||||||||| |||||||| ||||| |||||  |  |||| ||||| |||||||  |||           ||||  | ||  | |     |     |||  ||  ||  ||||   | |  || ||   || || |  |  ||| |             
AATGTCTTAAAGCTTTGTGATTTTGGTAATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGATCCCCTGAAATTAgtaagtatcat-----------attttgggttgtaaag----aggacttttcattggtgaagaatatgtgactgaagctt-ctattctttccattgcag------------

upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattc-------attgctatgatttat--gatttcataatcccaaactgtttttttcttgttgaatgcctcatggatgcc----aactgttttggcttttgaatgtttctatgcag------------------
|||||  |||| || ||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||| || |||||||||| ||||||       ||  |  |||||| |  ||  | || |    || ||  |||  |   || |  ||||  ||   |        |   |  || || || |||  ||   |                      
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6913830|gb|AW395360.1|AW395360
EST:     TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAA                         TACTTGGCTTGCCATATGATCATCCATTTGATATT
genomic: TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttcca ... ttctatgcagTACTTGGCTTGCCATATGATCATCCATTGGATATT
EST: gi|254315911|gb|GR825720.1|GR825720
EST:     TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAA                         TACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTT
genomic: TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttcca ... ttctatgcagTACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTT