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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgtatgtttccctttattgtccaagttcaatctattctacctgtaaaagttgcagagttttttatcagatattttatgcttgattattcttatggaccttag

Basic information

species Glycine max
transcript GLYMA10G41940.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 14
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 14
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgtatgtttccctttattgtccaagttcaatctattctacctgtaaaagttgcagagttttttatcagatattttatgcttgattattcttatggaccttag
|||||| || |||||||| || |||||    | |||  | || |||||||||||||| || ||||||||||| || ||||||||||| || |||||    ||||||   |  | | | |   | | |  |   || |  | | |  |    |||         |  |||| |||| |  | |  | |     ||
GTATATGTATATTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATGgtaa---tcccttgccttcctatgattcctttgtgttgtatgaatcattcgatgcaactttc--------tcatatggttgactgctgtgtttgcaaccag

upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 8
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgta-tgtttcccttt----attgtccaagttcaatctattctacc-tgtaaaagttgca-gagttttttatcagatattttatgcttgat----tattcttatggaccttag
||| || ||||||||||||||||| ||| ||| |||||| || ||| | |||||| | |||||||||||||| || ||||| || ||||||||||| |  || | |||     || |||||   |  | |  |  ||  || ||| |  | | ||  ||||||     || |       |||     ||||  | | ||||||||
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTGgtactacttgctttttcaagttttccaatcactttttccttgacagtgaaaacgaagtatgaaatttttaaatcctactcctcatctgacagtgtattggttttgaccttag

upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 8
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgta-tgtttcccttt----attgtccaagttcaatctattct--acc-tgtaaaagttgca-gagttttttatcagatattttatgcttgat----tattcttatggaccttag
||| || ||||||||||||||||| ||| ||| |||||| || ||  | |||||| | ||||||||||||||  | |||||||| ||||||||||| |  || | |||     || |||||  ||| | | | ||  ||  || |||||  | | || |||||||     ||||       |||     ||||  | | ||||||||
GTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTGgtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019147|gb|CX705889.1|CX705889
EST:     AATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG                         GAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTT
genomic: AATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgtatgtttcc ... tggaccttagGAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTT
EST: gi|58018861|gb|CX705603.1|CX705603
EST:     AATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG                         GAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTT
genomic: AATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgtatgtttcc ... tggaccttagGAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTT