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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaaccttagttcttttttattacccattttatttgaaccttcaaca...

Basic information

species Glycine max
transcript GLYMA10G41920.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 5'ss of exon 13
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaaccttagttcttttttattacccattttatttgaaccttcaaca
|| || || || || |||||||| || || ||||| ||||||||||| ||||| ||||| || ||||| ||||||||||| ||||| || |||||||| |||  ||| ||||  |||||||   |  || |  |   |  ||    |     | |      ||  || || ||||                        
TTCACTCCTCATCCACATGCTGGTGATAAGTGGTGCATCTATCCAAGCTATGACTATGCTCACTGCATGGTGGATTCTCTTGAGAACATTACACATTCGgtactttgcctttt-ctcaattagattgagttagttgcattatggcatgatgtggactaagtgtggttattcattag-----------------------

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 5'ss of exon 13
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaaccttagttcttttttattacccattttatttgaaccttcaaca--------------
||||| || || || |||||||| ||||| |||| |||||||||||| ||||| ||||| |||||  | || || ||||| || || || || ||||| |||| | || | || || || | | |   | |||     |  ||  | || |   |     | || |   || | || || |  | ||  || |    |               
TTTACACCTCATCCCCATGCTGGCGACAAGTGGTTTATCTATCCAAGCTATGACTATGCTCATTGTTTGGTTGACTCTCTTGAAAACATTACCCATTCGgtaa-tagtttctctct-aactacttttggttgtgtgagcc-ttaacatgttatcagttgaaattatcagttgt-acacactagaatttgacatatggctgttgcaatcaccag

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 13
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaaccttagttc--ttttttattacccattttatttgaaccttcaaca
|| ||||| || || |||||||| ||||| |||||| ||||||| || ||||| || || |||||||| ||||||||||| || || ||||||||||| |||| ||  | ||   |   | |  ||||  |  |  |  | ||   ||     ||||  ||  |   | | ||||  |  ||||   | |           
TTCACCCCCCATCCACATGCTGGCGACAAGTGGTGTGTCTATCCGAGCTATGACTACGCTCATTGCATGGTGGATTCTCTTGAAAACATCACACATTCGgtaatttcacctttttt---tcttttccaaatagtttt-tagttggtttaacaataacaataactaagtctgttatgtcttattt-gctag-----------

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 12
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgatacaattttct--tgctggtaaccttagttcttttttattacccattttatttgaaccttcaaca
|| ||||| || || |||||||| || || |||||||||||||| || ||||| ||||| |||||||| ||||||||||| || || ||||| ||||| |||| ||   | |   |   |||||     || ||||     |||     |    | |  |         || | |||    || | | | |          
TTCACCCCTCATCCACATGCTGGTGATAATTGGTGTATCTATCCGAGCTATGACTATGCTCATTGCATGGTGGATTCTCTTGAAAACATCACGCATTCGgtaattttcttattttttcttttccaaatagttttgagttggtttaacaataacaggatacaggaactgattctgttatttcttatttgttag---------

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaaccttagttcttttttattacc--cattttatttgaaccttcaaca------------------------------------------------------------------------------------
||  | || || ||| | ||||| ||||| |||||||||||||| |||||||||||||| || |||| ||| |||||||| |||||||| || ||||| || |||      ||  || |  || |     | ||  | ||   ||  |     |||| |||| |  |   | || ||   ||||  ||| |    | || |                                                                                    
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtc-----tctttcgagatcttttgcctatt--tgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 14
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtct--ttcactcaatttcctccaggtgttgatacaattttcttgctggtaaccttagttcttttttat-tacccattttatttgaaccttcaaca--
|||||||| || || ||| | || ||||| |||||||| |||||||||||||||||| | |||||||||||||||||||| || ||||| |||||||| ||| |||   |  ||   | | |||||| | | |  | | |   ||||||||    ||     || | ||| | || |   |||||   |||    |  |  |  
TTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCGgtatgttccttgctttgataagtttccttctgttactaagat--ttttcttgt--atatttcaagatgtttctcatgtttgcatttccattgc-tgtatagtatg

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgataca---attttcttgctggtaaccttagtt-cttttttattacccattttatttgaaccttcaaca
||||| || ||||| |||||||||||||| |||||| | ||||||||||| |||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||| | |  ||| | ||   | |||||||  | || ||      ||||||||  |         | |  || |||||  |     |||  |||||  ||  |  
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttt-tatcctccat-ttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgttt-cttgaaattttgat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561586|gb|CD487424.1|CD487424
EST:     ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCT                         CTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
EST: gi|254327577|gb|GR837186.1|GR837186
EST:     ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCT                         CTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG