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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatattttttaggtttaaatgcaattttgattcccttattttaaaatagagacatttagtcctcatattttaatatctataattttag...

Basic information

species Glycine max
transcript GLYMA10G38920.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g56630.1 (Oryza sativa), 5'ss of exon 14
GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatattttttaggtttaaatgc--aattttgattcccttattttaaaatagagacatttagtcctcatattttaatat-ctataattttag-------
|| |||||||| ||  ||||  | || || || |||||||||||||| || ||||| |||||||||||| || |||| || ||||| || |||||||| || |   ||| |||  |  |  |||  || |   | | |   ||  | || || ||   |    ||| || || | |  ||  ||| | |||         
GTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAgtatgtgttat-tgcttttcttacatgaacttgccaaagtacaaatacagaataatcaacta-aggtttcctttccaca-atctcaccatgttatgaatttgtctggaag

upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G078576_T04 (Zea mays), 5'ss of exon 14
GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatattttttaggtttaaatgca-attttgattcccttattttaaaatagagacatttagtcctcatattttaatatctataattttag
|| || |||||  || ||||  | || || || ||| ||||||| || ||||||||||| || ||||||||| |||| ||||| || ||||||||||| ||   |  ||   |  |||| | | | |  || ||    ||     |   |    | |||   | || |   | | |||             
GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgttattgtttattgcaacttttataagtacacattaatctattttccagattctcatcatattatattctgagtgtctgatag------------

upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 14
GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatatttttta------ggtttaaatgcaatttt-----gattcccttattttaaaatagag-acatttagtcctca--tattttaa-tatctataa----ttttag------------------------------------------------------------------
|| || ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||| |||| || || || |||||  |   || || | || ||||      |||||  ||  |  | |      | ||    | ||||  | |||| |  |||||     |  | |  ||| |  ||||||    | ||||                                                                  
GTTGTATATGCAATAATGCACAGACAGGAGGTCTTTCAGCCTTTCAAGAATCATCCACGATTCAATGAGCTGCTTGAAAATATCTACACTgtgagctccagattttttgtttaaaccatggtttttatttatctcttttacaaatcttgcaatttatcaaagagcaggtttaggtggtagttgtaataactgcctataagctttcttagtatctaaattttatagtatgcttgtctacgtgcttcagaattatatgatgcctgcttattttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393515|gb|EV263390.1|EV263390
EST:     GTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG
genomic: GTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG
EST: gi|9898564|gb|BE607532.1|BE607532
EST:     GTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG
genomic: GTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG